Frislev, H. K. S., Pedersen, J. N., Pedersen, J. S. & Otzen, D. E. (2016). Liprotides: Nano-Sized Cytotoxic Protein-Fatty Acid Complexes with a Core-Shell or Multi-Layer Structure. Biophysical Journal, 110(3), 577A. https://doi.org/10.1016/j.bpj.2015.11.3087

Jansen, M. A. A., Klausen, L. H., Thanki, K., Lyngsø, J., Skov Pedersen, J., Franzyk, H., Nielsen, H. M., van Eden, W., Dong, M., Broere, F., Foged, C. & Zeng, X. (2019). Lipidoid-polymer hybrid nanoparticles loaded with TNF siRNA suppress inflammation after intra-articular administration in a murine experimental arthritis model. European Journal of Pharmaceutics and Biopharmaceutics, 142, 38-48. https://doi.org/10.1016/j.ejpb.2019.06.009

Deen, R. & Pedersen, J. S. (2006). Late-stage coarsening of oil droplets of excess oil in microemulsions following a temperature quench. International Journal of Materials Research, 97(3), 285-289.

Manet, S., Schmit, J., Imperor-Clerc, M., Zholobenko, V., Durand, D., Oliveira, C. L. P. D., Pedersen, J. S., Gervais, C., Bacille, N., Babonneau, F., Grillo, I., Meneau, F. & Rochas, C. (2011). Kinetics of the Formation of 2D-Hexagonal Silica Nanostructured Materials by Nonionic Block Copolymer Templating in Solution. Journal of Physical Chemistry Part B: Condensed Matter, Materials, Surfaces, Interfaces & Biophysical, 115(39), 11330-113344. https://doi.org/10.1021/jp200213k

Amann, M., Diget, J. S., Lyngsø, J., Pedersen, J. S., Narayanan, T. & Lund, R. (2019). Kinetic Pathways for Polyelectrolyte Coacervate Micelle Formation Revealed by Time-Resolved Synchrotron SAXS. Macromolecules, 52(21), 8227-8237. https://doi.org/10.1021/acs.macromol.9b01072

Forooqi Motlaq, V., Ortega-Holmberg, M., Edwards, K., Gedda, L., Lyngsø, J., Pedersen, J. S. & Bergström, L. M. (2021). Investigation of the enhanced ability of bile salt surfactants to solubilize phospholipid bilayers and form mixed micelles. Soft Matter, 17(33), 7769-7780. https://doi.org/10.1039/d1sm00745a

Skyt, P. S., Jensen, G. V., Wahlstedt, I. H., Petersen, J. B. B., Muren, L. P., Pedersen, J. S. & Balling, P. (2014). Investigation of nanoscale structures by small-angle X-ray scattering in a radiochromic dosimeter. R S C Advances, 4(18), 9152-9159. https://doi.org/10.1039/c3ra46605a

López Hernández, M., Otzen, D. E. & Pedersen, J. S. (2025). Investigating the interactions between an industrial lipase and anionic (bio)surfactants. Journal of Colloid and Interface Science, 679(B), 294-306. https://doi.org/10.1016/j.jcis.2024.10.060

Hansen, J., Uthayakumar, R., Pedersen, J. S., Egelhaaf, S. U. & Platten, F. (2021). Interactions in protein solutions close to liquid-liquid phase separation: ethanol reduces attractions via changes of the dielectric solution properties. Physical Chemistry Chemical Physics, 23(39), 22384-22394. https://doi.org/10.1039/d1cp03210k

Najarzadeh, Z., Mohammad-Beigi, H., Pedersen, J. N., Christiansen, G., Pedersen, J. S., Nielsen, J. & Otzen, D. E. (2022). Interaction of membrane vesicles with the Pseudomonas functional amyloid protein FapC facilitates amyloid formation. BBA advances, 2, Article 100055. https://doi.org/10.1016/j.bbadva.2022.100055

Michaux, F., Bacille, N., Impéror-Clerc, M., Malfatti, L., Folliet, N., Gervais, C., Manet, S., Meneau, F., Pedersen, J. S. & Babonneau, F. (2012). In Situ Time-Resolved SAXS Study of the Formation of Mesostructured Organically Modified Silica through Modeling of Micelles Evolution during Surfactant-Templated Self-Assembly. Langmuir, 28(50), 17477–17493. https://doi.org/10.1021/la3038318

Tyrsted, C., Becker-Christensen, J., Hald, P., Bremholm, M., Pedersen, J. S., Chevallier, J., Cerenius, Y., Iversen, S. & Iversen, B. B. (2010). In-Situ Synchrotron Radiation Study of Formation and Growth of Crystalline CexZr1-xO2 Nanoparticles Synthesized in Supercritical Water. Chemistry of Materials, 22, 1814-1820. https://doi.org/10.1021/cm903316s

Schmitt, J., Canilho, N., Impéror-Clerc, M., Blin, J.-L., Pedersen, J. S., Pérez, J., Lebeau, B., Vidal, L. & Stébé, M.-J. (2015). In Situ Small-Angle X-ray Scattering Investigation of the Formation of Dual-Mesoporous Materials. ChemPhysChem, 16(17), 3637-3641. https://doi.org/10.1002/cphc.201500642

Jensen, H., Bremholm, M., Nielsen, R. P., Joensen, K. D., Pedersen, J. S., Birkedal, H., Chen, Y.-S., Almer, J., Søgaard, E. G., Iversen, S. B. & Iversen, B. B. (2007). In Situ High-Energy Synchrotron Radiation Study of Sol-Gel Nanoparticle Formation in Supercritical Fluids. Angewandte Chemie International Edition, 46, 1113-1116.

Zhou, Y., Jones, N. C., Pedersen, J. N., Perez, B., Hoffmann, S. V., Petersen, S. V., Pedersen, J. S., Perriman, A., Kristensen, P., Gao, R. & Guo, Z. (2019). Insight into the structure and activity of surface-engineered lipase biofluids. ChemBioChem, 20(10), 1266-1272. https://doi.org/10.1002/cbic.201800819

Pérez, B., Coletta, A., Pedersen, J. N., Petersen, S. V., Periole, X., Pedersen, J. S., Sessions, R. B., Guo, Z., Perriman, A. & Schiøtt, B. (2018). Insight into the molecular mechanism behind PEG-mediated stabilization of biofluid lipases. Scientific Reports, 8(1), Article 12293. https://doi.org/10.1038/s41598-018-29871-z

Berndt, I., Pedersen, J. S., Lindner, P. & Richtering, W. (2006). Influence of Shell Thickness and Cross-Link Density on the Structure of Temperature-Sensitive Poly-N-Isopropylacrylamide-Poly-N-Isopropylmethacrylamide Core-Shell Microgels Investigated by Small-Angle Neutron Scattering. Langmuir, 22, 459-468.

Rasmussen, H. Ø., Otzen, D. E. & Pedersen, J. S. (2022). Induction, inhibition, and incorporation: Different roles for anionic and zwitterionic lysolipids in the fibrillation of the functional amyloid FapC. The Journal of Biological Chemistry, 298(2), Article 101569. https://doi.org/10.1016/j.jbc.2022.101569

Li, R., Neofytos, D., Kirkensgaard, J. J. K., Pal, A., Pedersen, J. S. & Corredig, M. (2025). In-depth exploration of the structure of pea albumin, its fractions and their heating and foaming properties. Journal of Colloid and Interface Science, 692, Article 137507. https://doi.org/10.1016/j.jcis.2025.137507

Pauw, B., Pedersen, J. S., Tardif, S., Takata, M. & Iversen, B. B. (2013). Improvements and considerations for size distribution retrieval from small-angle scattering data by Monte-Carlo methods. Journal of Applied Crystallography, 46(2), 365-371. https://doi.org/10.1107/S0021889813001295

Tomsen-Melero, J., Passemard, S., García-Aranda, N., Días-Riascos, Z. V., González-Rioja, R., Pedersen, J. N., Lyngsø, J., Merlo-Mas, J., Cristóbal-Lecina, E., Corchero, J. L., Pulido, D., Cámara-Sánchez, P., Portnaya, I., Ionita, I., Schwarz, Jr., S., Veciana, J., Sala, S., Royo, M., Córdoba, A. ... Ventosa, N. (2021). Impact of Chemical Composition on the Nanostructure and Biological Activity of α-Galactosidase-Loaded Nanovesicles for Fabry Disease Treatment. ACS applied materials & interfaces, 13(7), 7825-7838. https://doi.org/10.1021/acsami.0c16871

Ruskamo, S., Raasakka, A., Pedersen, J. S., Martel, A., Škubník, K., Darwish, T., Porcar, L. & Kursula, P. (2022). Human myelin proteolipid protein structure and lipid bilayer stacking. Cellular and Molecular Life Sciences, 79(8), Article 419. https://doi.org/10.1007/s00018-022-04428-6

van't Hag, L., Li, X., Meikle, T. G., Hoffmann, S. V., Jones, N. C., Pedersen, J. S., Hawley, A. M., Gras, S. L., Conn, C. E. & Drummond, C. J. (2016). How Peptide Molecular Structure and Charge Influence the Nanostructure of Lipid Bicontinuous Cubic Mesophases: Model Synthetic WALP Peptides Provide Insights. Langmuir, 32(27), 6882-6894. https://doi.org/10.1021/acs.langmuir.6b01058

Dubbert, J., Honold, T., Pedersen, J. S., Radulescu, A., Drechsler, M., Karg, M. & Richtering, W. (2014). How hollow are thermoresponsive hollow nanogels? Macromolecules, 47(24), 8700-8708. https://doi.org/10.1021/ma502056y

Malmos, K. G., Bjerring, M., Jessen, C. M., Nielsen, E. H. T., Poulsen, E. T., Christiansen, G., Vosegaard, T., Skrydstrup, T., Enghild, J. J., Pedersen, J. S. & Otzen, D. E. (2016). How Glycosaminoglycans Promote Fibrillation of Salmon Calcitonin. Journal of Biological Chemistry, 291(32), 16849-16862. https://doi.org/10.1074/jbc.M116.715466

Lorenzen, N., Nielsen, S. B., Yoshimura, Y., Vad, B. S., Andersen, C. B., Betzer, C., Kaspersen, J. D., Christiansen, G., Pedersen, J. S., Jensen, P. H., Mulder, F. A. A. & Otzen, D. E. (2014). How epigallocatechin gallate can inhibit α-synuclein oligomer toxicity in vitro. Journal of Biological Chemistry, 289(31), 21299-21310. https://doi.org/10.1074/jbc.M114.554667

Otzen, D. E., Pedersen, J. N., Rasmussen, H. Ø. & Pedersen, J. S. (2022). How do surfactants unfold and refold proteins? Advances in Colloid and Interface Science, 308, Article 102754. https://doi.org/10.1016/j.cis.2022.102754

Antuma, L. J., Si, Y., Garamus, V. M., Pedersen, J. S., Gräf, V., Walz, E., Boom, R. M. & Keppler, J. K. (2025). Hot or not? Modulating the functionality of artificial casein micelles with the preparation temperature. Future Foods, 11, Article 100543. https://doi.org/10.1016/j.fufo.2025.100543

Antoniuk, I., Plazzotta, B., Wintgens, V., Volet, G., Nielsen, T. T., Pedersen, J. S. & Amiel, C. (2017). Host-guest interaction and structural ordering in polymeric nanoassemblies: Influence of molecular design. International Journal of Pharmaceutics, 531(2), 433-443. https://doi.org/10.1016/j.ijpharm.2017.02.061

Paslawski, W., Andreasen, M., Nielsen, S. B., Lorenzen, N., Thomsen, K., Kaspersen, J. D., Pedersen, J. S. & Otzen, D. (2014). High stability and cooperative unfolding of cytotoxic α-synuclein oligomers. Biochemistry, 53(39), 6252-6263. https://doi.org/10.1021/bi5007833

Haldrup, S., Catalano, J., Hansen, M. R., Wagner, M., Jensen, G. V., Pedersen, J. S. & Bentien, A. (2015). High Electrokinetic Energy Conversion Efficiency in Charged Nanoporous Nitrocellulose/Sulfonated Polystyrene Membranes. Nano Letters, 15(2), 1158-1165. https://doi.org/10.1021/nl5042287

Bertin, A., Renouard, M., Pedersen, J. S., Livolant, F. & Durand, D. (2007). H3 and H4 Histone Tails Play a Central Role in the Interactions of Recombinant NCPs. Biophysical Journal, 92(7), 2633-2645.

Arleth, L., Bauer, R., Ogendal, L. H., Egelhaaf, S. U., Schurtenberger, P. & Pedersen, J. S. (2003). Growth behavior of mixed wormlike micelles: a small-angle scattering study of the lecithin-bile salt system. Langmuir, 19, 4096-4104.

Madsen, J. K., Kaspersen, J. D., Andersen, C. B., Nedergaard Pedersen, J., Andersen, K. K., Pedersen, J. S. & Otzen, D. E. (2017). Glycolipid Biosurfactants Activate, Dimerize, and Stabilize Thermomyces lanuginosus Lipase in a pH-Dependent Fashion. Biochemistry, 56(32), 4256-4268. https://doi.org/10.1021/acs.biochem.7b00420

Cramer, J. F., Gustafsen, C., Behrens, M. A., Oliveira, C. L. P., Pedersen, J. S., Madsen, P., Petersen, C. M. & Thirup, S. S. (2010). GGA autoinhibition revisited. Traffic, 11(2), 259-73. https://doi.org/10.1111/j.1600-0854.2009.01017.x

Kaspersen, J. D., Pedersen, J. N., Hansted, J. G., Nielsen, S. B., Sakthivel, S., Wilhelm, K., Nemashkalova, E. L., Permyakov, S. E., Permyakov, E. A., Pinto Oliveira, C. L., Morozova-Roche, L. A., Otzen, D. & Pedersen, J. S. (2014). Generic Structures of Cytotoxic Liprotides: Nano-Sized Complexes with Oleic Acid Cores and Shells of Disordered Proteins. ChemBioChem, 10(18), 2693-2702. https://doi.org/10.1002/cbic.201402407

Oliveira, C. L. P., Gerbelli, B. B., Silva, E. R. T., Nallet, F., Navailles, L., Oliveira, E. A. & Pedersen, J. S. (2012). Gaussian deconvolution: a useful method for a form-free modeling of scattering data from mono- and multilayered planar systems. Journal of Applied Crystallography, 45(6), 1278-1286. https://doi.org/10.1107/S002188981204191X

Mohammad-Beigi, H., Morshedi, D., Shojaosadati, S. A., Pedersen, J. N., Marvian, A. T., Aliakbari, F., Christiansen, G., Pedersen, J. S. & Otzen, D. E. (2016). Gallic acid loaded onto polyethylenimine-coated human serum albumin nanoparticles (PEI-HSA-GA NPs) stabilizes α-synuclein in the unfolded conformation and inhibits aggregation. RSC Advances, 6(88), 85312-85323. https://doi.org/10.1039/c6ra08502d

Svaneborg, C. & Pedersen, J. S. (2002). Form factors of block copolymer micelles with excluded-volume interactions of the corona chains determined by Monte Carlo simulations. Macromolecules, 35, 1028-1037.

Schmitt, J., Impéror-Clerc, M., Michaux, F., Blin, J.-L., Stébé, M.-J., Pedersen, J. S. & Meneau, F. (2013). Formation of Nanostructured Silica Materials Templated with Nonionic Fluorinated Surfactant Followed by in Situ SAXS. Langmuir, 29(6), 2007-2023. https://doi.org/10.1021/la304648j

Abelein, A., Kaspersen, J. D., Nielsen, S. B., Jensen, G. V., Christiansen, G., Pedersen, J. S., Danielsson, J. A., Otzen, D. & Gräslund, A. (2013). Formation of dynamic soluble surfactant-induced amyloid β peptide aggregation intermediates. Journal of Biological Chemistry, 288, 23518-23528. https://doi.org/10.1074/jbc.M113.470450

Sønderby, T. V., Rasmussen, H. Ø., Frank, S. A., Skov Pedersen, J. & Otzen, D. E. (2022). Folding steps in the fibrillation of functional amyloid: denaturant sensitivity reveals common features in nucleation and elongation. Journal of Molecular Biology, 434(2), Article 167337. https://doi.org/10.1016/j.jmb.2021.167337

Rasmussen, H. Ø., Kumar, A., Shin, B., Stylianou, F., Sewell, L., Xu, Y., Otzen, D. E., Pedersen, J. S. & Matthews, S. J. (2023). FapA is an Intrinsically Disordered Chaperone for Pseudomonas Functional Amyloid FapC. Journal of Molecular Biology, 435(2), Article 167878. https://doi.org/10.1016/j.jmb.2022.167878

Sörensen, M. H., Corkery, R. W., Pedersen, J. S., Rosenholm, J. & Alberius, P. C. (2008). Expansion of the F127-templated mesostructure in aerosol-generated particles by using polypropylene glycol as a swelling agent. Microporous and Mesoporous Materials, 113, 1-13.

Mardal, F., Coskun, O., Razi Parjikolaei, B., Møller, T. L., Pedersen, J. S. & Corredig, M. (2025). Evaluating the impact of diafiltration media and heat treatment on the structure and gelation of microfiltered casein-rich concentrates. Food Hydrocolloids, 164, Article 111221. https://doi.org/10.1016/j.foodhyd.2025.111221

Kjøniksen, A.-L., Zhu, K., Behrens, M. A., Pedersen, J. S. & Nyström, B. (2011). Effects of Temperature and Salt Concentration on the Structure and Dynamical Features inAqueous Solution of Charged Triblock Copolymers. Journal of Physical Chemistry Part B: Condensed Matter, Materials, Surfaces, Interfaces & Biophysical, 115, 2125-2139.

Falk, Y. Z., Engblom, J., Pedersen, J. S., Arnebrant, T. & Kocherbitov, V. (2018). Effects of Hydration on Structure and Phase Behavior of Pig Gastric Mucin Elucidated by SAXS. Journal of Physical Chemistry B, 122(30), 7539-7546. https://doi.org/10.1021/acs.jpcb.8b05496

Fehér, B., Zhu, K., Nyström, B., Varga, I. & Pedersen, J. S. (2019). Effect of Temperature and Ionic Strength on Micellar Aggregates of Oppositely Charged Thermoresponsive Block Copolymer Polyelectrolytes. Langmuir, 35(42), 13614-13623. https://doi.org/10.1021/acs.langmuir.9b01896

Qu, D., Pedersen, J. S., Garnier, S., Laschewsky, A., Möhwald, H. & Klitzing, R. V. (2006). Effect of Polymer Charge and Geometrical Confinement on Ion Distribution and the Structuring in Semidilute Polyelectrolyte Solutions: Comparison between AFM and SAXS. Macromolecules, 39, 7364-7371.

Fehér, B., Lyngsø, J., Bartók, B., Mihály, J., Varga, Z., Mészáros, R., Pedersen, J. S., Bóta, A. & Varga, I. (2020). Effect of pH on the conformation of bovine serume albumin - gold bioconjugates. Journal of Molecular Liquids, 309, Article 113065. https://doi.org/10.1016/j.molliq.2020.113065