Publications

Šuláková, M., Pazlarová, J., Meyer, R. L. & Demnerová, K. (2019). Distribution of extracellular DNA in Listeria monocytogenes biofilm. Czech Journal of Food Sciences, 37(6), 409-416. https://doi.org/10.17221/9/2019-CJFS

Österlund, L., Pedersen, M. Ø., Stensgaard, I., Lægsgaard, E. & Besenbacher, F. (1999). Quantitative determination of adsorbate-adsorbate interactions. Physical Review Letters, 83, 4812.

Ómarsson, B., Bald, I. & Ingólfsson, O. (2012). Negative ion formation mechanism and velocity distribution in laser desorption/ionization of C. The European Physical Journal D: Atomic, Molecular, Optical and Plasma Physics, 66(3), 72. https://doi.org/10.1140/epjd/e2012-20639-x

Ångström, J., Johansson, R., Rude, L. H., Gundlach, C., Scheicher, R. H., Ahuja, R., Eriksson, O., Jensen, T. R. & Sahlberg, M. (2013). Hydrogen storage properties of the pseudo binary laves phase (Sc_1-xZr_x)(Co_1-yNi_y)₂ system. International Journal of Hydrogen Energy, 38(23), 9772-9778. https://doi.org/10.1016/j.ijhydene.2013.05.053

Åkesson, A., Bendtsen, K. M., Behrens, M. A., Pedersen, J. S., Alfredsson, V. & Cárdenas Gómez, M. (2010). The effect of PAMAM G6 dendrimers on the structure of lipid vesicles. Physical chemistry chemical physics : PCCP, 12(38), 12267-72. https://doi.org/10.1039/c0cp00172d

Åhlund, J., Schnadt, J., Nilson, K., Göthelid, E., Schiessling, J., Besenbacher, F., Mårtensson, N. & Puglia, C. (2007). The adsorption of iron phthaloyaninen on graphite: A scanning tunneling microscopy study. Surface Science, 3661-3667.

Álvarez-Martos, I. & Ferapontova, E. (2016). Electrochemical Label-Free Aptasensor for Specific Analysis of Dopamine in Serum in the Presence of Structurally Related Neurotransmitters. Analytical Chemistry, 88(7), 3608-3616. https://doi.org/10.1021/acs.analchem.5b04207

Álvarez-Martos, I., Kartashov, A. & Ferapontova, E. (2016). Electron Transfer in Methylene-Blue-Labeled G3 Dendrimers Tethered to Gold. ChemElectroChem, 3(12), 2270-2280. https://doi.org/10.1002/celc.201600417

Álvarez-Martos, I. & Ferapontova, E. (2017). A DNA sequence obtained by replacement of the dopamine RNA aptamer bases is not an aptamer. Biochemical and Biophysical Research Communications, 489(4), 381-385. https://doi.org/10.1016/j.bbrc.2017.05.134

Álvarez-Martos, I., Shahdost-fard, F. & Ferapontova, E. (2017). Wiring of heme enzymes by methylene-blue labeled dendrimers. Electrochimica Acta, 249, 206-215. https://doi.org/10.1016/j.electacta.2017.07.161

Álvarez-Martos, I. & Ferapontova, E. (2018). “Negative electrocatalysis”-based specific analysis of dopamine at basal plane HOPG in the presence of structurally related catecholamines. Electrochemistry Communications, 89, 48-51. https://doi.org/10.1016/j.elecom.2018.02.019

Álvarez-Martos, I. & Ferapontova, E. E. (2018). Electrocatalytic Discrimination between Dopamine and Norepinephrine at Graphite and Basal Plane HOPG Electrodes. Electroanalysis, 30(6), 1082-1090. https://doi.org/10.1002/elan.201700837

Álvarez-Martos, I., Møller, A. & Ferapontova, E. E. (2019). Dopamine Binding and Analysis in Undiluted Human Serum and Blood by the RNA-Aptamer Electrode. ACS Chemical Neuroscience, 10(3), 1706-1715. https://doi.org/10.1021/acschemneuro.8b00616

van't Hag, L., Li, X., Meikle, T. G., Hoffmann, S. V., Jones, N. C., Pedersen, J. S., Hawley, A. M., Gras, S. L., Conn, C. E. & Drummond, C. J. (2016). How Peptide Molecular Structure and Charge Influence the Nanostructure of Lipid Bicontinuous Cubic Mesophases: Model Synthetic WALP Peptides Provide Insights. Langmuir, 32(27), 6882-6894. https://doi.org/10.1021/acs.langmuir.6b01058

van der Westen, R., Rigau, L. H., Sutherland, D. S., Goldie, K., Alebericio, F., Postma, A. & Stadler, B. (2012). Myoblast Cell Interaction with Polydopamine Coated Liposomes. Biointerphases, 7, 8. https://doi.org/10.1007/s13758-011-0008-4

van Gils, J. H. M., van Dijk, E., Peduzzo, A., Hofmann, A., Vettore, N., Schützmann, M. P., Groth, G., Mouhib, H., Otzen, D. E., Buell, A. K. & Abeln, S. (2020). The hydrophobic effect characterises the thermodynamic signature of amyloid fibril growth. PLOS Computational Biology, 16(5), [e1007767]. https://doi.org/10.1371/journal.pcbi.1007767

van Diggelen, F., Tepper, A., Petri, M. & Otzen, D. (2017). α-Synuclein Oligomers: A Study in Diversity. Israel Journal of Chemistry, 57(7-8), 699-723. https://doi.org/10.1002/ijch.201600116

van Diggelen, F., Hrle, D., Apetri, M., Christiansen, G., Rammes, G., Tepper, A. & Otzen, D. E. (2019). Two conformationally distinct α-synuclein oligomers share common epitopes and the ability to impair long-term potentiation. PLOS ONE, 14(3), [0213663]. https://doi.org/10.1371/journal.pone.0213663

van Diggelen, F., Frank, S. A., Somavarapu, A. K., Scavenius, C., Apetri, M. M., Nielsen, J., Tepper, A. W. J. W., Enghild, J. J. & Otzen, D. E. (2020). The interactome of stabilized α-synuclein oligomers and neuronal proteins. The FEBS Journal, 287(10), 2037-2054. https://doi.org/10.1111/febs.15124

ul Akbar, N., Khan, S. N., Amin, M. U., Ishfaq, M., Cabral-Marques, O., Schimke, L. F., Iqbal, A., Ullah, I., Hussain, M., Ali, I., Khan, N., El Khawanky, N., Rahman, H. & Khan, T. A. (2019). Novel nonsense IL-12Rβ1 mutation associated with recurrent tuberculosis. Immunologic Research, 67(4-5), 408-415. https://doi.org/10.1007/s12026-019-09094-8

dos Reis, D. D., Barreto, L., Bianchi, M., Silva Ribeiro, G. A., Soares, E. A., Simões e Silva, W., Eustáquio de Carvalho, V., Rawle, J., Hoesch, M., Nicklin, C., Fernandes, W. P., Mi, J., Iversen, B. B. & Hofmann, P. (2013). Surface structure of Bi₂Se₃(111) determined by low-energy electron diffraction and surface x-ray diffraction. Physical Review B, 88, [041404]. https://doi.org/10.1103/PhysRevB.88.041404

de Paz, L., Resin, A., Howard, K., Sutherland, D. S. & Wejse, P. (2011). Antimicrobial effect of chitosan nanoparticles on streptococcus mutans biofilms. Applied and Environmental Microbiology, 77(11), 3892-3895.

de Kruif, C. G. K., Pedersen, J. S., Huppertz, T. & Anema, S. G. (2013). Coacervates of Lactotransferrin and β- or κ-Casein: Structure Determined Using SAXS. Langmuir, 29(33), 10483-10490. https://doi.org/10.1021/la402236f

de Ford , C., Calderon, C., Sehgal, P., Fedosova, N., Murillo, R., Olesen, C., Nissen, P., Møller, J. V. & Merfort, I. (2015). Discovery of Tricyclic Clerodane Diterpenes as Sarco/Endoplasmic Reticulum Ca(2+)-ATPase Inhibitors and Structure-Activity Relationships. Journal of Natural Products, 78 (6), 1262–1270.

de Diego, I., Ksiazek, M., Mizgalska, D., Koneru, L., Golik, P., Szmigielski, B., Nowak, M., Nowakowska, Z., Potempa, B., Houston, J. A., Enghild, J. J., Thøgersen, I. B., Gao, J., Kwan, A. H., Trewhella, J., Dubin, G., Gomis-Rüth, F. X., Nguyen, K-A. & Potempa, J. (2016). The outer-membrane export signal of Porphyromonas gingivalis type IX secretion system (T9SS) is a conserved C-terminal β-sandwich domain. Scientific Reports, 6, 23123. https://doi.org/10.1038/srep23123

de Almeida Campos, R. C. & Ferapontova, E. (2014). Electrochemistry of weakly adsorbed species: Voltammetric analysis of electron transfer between gold electrodes and Ru hexaamine electrostatically interacting with DNA duplexes. Electrochimica Acta, 126, 151-157. https://doi.org/10.1016/j.electacta.2013.07.083

de Almeida Campos, R. C., Kotlyar, A. & Ferapontova, E. (2014). DNA-Mediated Electron Transfer in DNA Duplexes Tethered to Gold Electrodes via Phosphorothioated dA Tags. Langmuir, 30(40), 11853–11857. https://doi.org/10.1021/la502766g

de Almeida Campos, R. C., Zhang, S., Majikes, J. M., Ferraz, L. C. C., LaBean, T. H., Dong, M. D. & Ferapontova, E. E. (2015). Electronically addressable nanomechanical switching of i-motif DNA origami assembled on basal plane HOPG. Chemical Communications, 51(74), 14111-14114. https://doi.org/10.1039/c5cc04678e

da Silva, A. P. B., Ellen, R. P., Sørensen, E. S., Goldberg, H. A., Zohar, R. & Sodek, J. (2009). Osteopontin attenuation of dextran sulfate sodium-induced colitis in mice. Laboratory Investigation, 89(10), 1169-81.

Zwieb, C., Nakao, Y., Nakashima, T., Takagi, H., Goda, S., Andersen, E. S., Kakuta, Y. & Kimura, M. (2011). Structural modeling of RNase P RNA of the hyperthermophilic archaeon Pyrococcus horikoshii OT3. Biochemical and Biophysical Research Communications, 414(3), 517-522. https://doi.org/10.1016/j.bbrc.2011.09.098

Zuwala, K., Smith, A. A. A., Postma, A., Guerrero-Sanchez, C., Ruiz Sanchis, P., Melchjorsen, J., Tolstrup, M. & Zelikin, A. N. (2015). Polymers Fight HIV: Potent (Pro)Drugs Identified Through Parallel Automated Synthesis. Advanced Healthcare Materials, 4(1), 46-50. https://doi.org/10.1002/adhm.201400148

Zuwala, K., Smith, A. A. A., Tolstrup, M. & Zelikin, A. N. (2016). HIV anti-latency treatment mediated by macromolecular prodrugs of histone deacetylase inhibitor, panobinostat. Chemical Science, 7(3), 2353-2358. https://doi.org/10.1039/c5sc03257a

Zou, L., Luo, Y., Chen, M., Wang, G., Ding, M., Petersen, C. C., Kang, R., Dagnaes-Hansen, F., Zeng, Y., Lv, N., Ma, Q., Le, D. Q. S., Besenbacher, F., Bolund, L., Jensen, T. G., Kjems, J., Pu, W. T. & Bünger, C. (2013). A simple method for deriving functional MSCs and applied for osteogenesis in 3D scaffolds. Scientific Reports, 3, [2243]. https://doi.org/10.1038/srep02243

Zong, W., Thingholm, B., Itel, F., Schattling, P. S., Brodszkij, E., Mayer, D., Stenger, S., Goldie, K. N., Han, X. & Städler, B. (2018). Phospholipid-Block Copolymer Hybrid Vesicles with Lysosomal Escape Ability. Langmuir, 34(23), 6874-6886. https://doi.org/10.1021/acs.langmuir.8b01073

Zlotea, C., Sow, M. A., Ek, G., Couzinie, J-P., Perriere, L., Guillot, I., Bourgon, J., Moller, K. T., Jensen, T. R., Akiba, E. & Sahlberg, M. (2019). Hydrogen sorption in TiZrNbHfTa high entropy alloy. Journal of Alloys and Compounds, 775, 667-674. https://doi.org/10.1016/j.jallcom.2018.10.108

Ziolkowski, M., Weijo, V., Jørgensen, P. & Olsen, J. (2008). An efficient algorithm for solving nonlinear equations with a minimal number of trial vectors: Applications to atomic-orbital based coupled-cluster theory. Journal of Chemical Physics, 128, 204105.

Ziolkowski, M., Jansik, B., Jørgensen, P. & Olsen, J. (2009). Maximum locality in occupied and virtual orbital spaces using a least change strategy. Journal of Chemical Physics, 131, 124112.

Zhuang, X., Gehrig, D., Forler, N., Liang, H., Wagner, M., Hansen, M. R., Laquai, F., Zhang, F. & Feng, X. (2015). Conjugated Microporous Polymers with Dimensionality-Controlled Heterostructures for Green Energy Devices. Advanced Materials, 27(25), 3789-3796. https://doi.org/10.1002/adma.201501786

Zhu, X-G., Stensgaard, M., Barreto, L., Silva, W. S. E., Ulstrup, S., Michiardi, M., Bianchi, M., Dendzik, M. & Hofmann, P. (2013). Three Dirac points on the (110) surface of the topological insulator Bi_1-xSb_x. New Journal of Physics, 15, [103011]. https://doi.org/10.1088/1367-2630/15/10/103011

Zhu, X-G. & Hofmann, P. (2014). Topological surface states on Bi$_{1-x}$Sb$_x$: Dependence on surface orientation, surface termination and stability. Physical Review B, 89, [125402]. https://doi.org/10.1103/PhysRevB.89.125402