Publications

Ferrighi, L., Pan, Y., Grönbeck, H. & Hammer, B. (2012). Study of Alkylthiolate Self-assembled Monolayers on Au(111) Using a Semilocal meta-GGA Density Functional. The Journal of Physical Chemistry Part C, 116(13), 7374–7379. https://doi.org/10.1021/jp210869r

Zhang, S., Jiang, Z., Besenbacher, F. & Dong, M. (2014). Study Sub-Membrane Structure and Corresponding Functions of Conductive Bacteria Cable by SPMs. Biophysical Journal, 106(2), 799A-799A.

Ebran, J-P., Lindhardt, A. T., Gøgsig, T. & Skrydstrup, T. (2007). Studies on the Heck Reaction with Alkenyl Phosphates: Can the 1,2-Migration Be Controlled? Scope and Limitations. Journal of the American Chemical Society, 129(21), 6931-6942. https://doi.org/10.1021/ja070321b

Lindhardt, A. T., Gøgsig, T. & Skrydstrup, T. (2009). Studies on the 1,2-Migrations in Pd-Catalyzed Negishi Couplings with JosiPhos Ligands. Journal of Organic Chemistry, 74, 135.

Skibsted, J., Sevelsted, T. F., Poulsen, S. L. & Tran, T. T. (2013). Studies of guest-ion incorporation in Portland cement - Part 2. ZKG International, 66(6), 46-52.

Skibsted, J., Sevelsted, T. F., Poulsen, S. L. & Tran, T. T. (2013). Studies of guest-ion incorporation in Portland cemen - Part 1. ZKG International, 66(4), 66-73.

Johannesen, S. A., Pedersen, B. O., Duus, J. Ø. & Skrydstrup, T. (2007). Studies directed to understanding the structure of chitosan-metal complexes: investigations of mono- and disaccharide models with platinum (II) group metals. Inorg. Chem., 4326-4335.

Jensen, G. V., Shi, Q., Deen, R., Almdal, K. & Pedersen, J. S. (2012). Structures of PEP-PEO Block Copolymer Micelles: Effects of Changing Solvent and PEO Length and Comparison to a Themodynamic Model. Macromolecules, 45(1), 430-440. https://doi.org/10.1021/ma2016369

Pedersen, J. N., Frislev, H. K. S., Pedersen, J. S. & Otzen, D. (2020). Structures and mechanisms of formation of liprotides. B B A - Proteins and Proteomics, 1868(11), [140505]. https://doi.org/10.1016/j.bbapap.2020.140505

Yatime, L., Schmitt, E., Blanquet, S. & Mechulam, Y. (2005). Structure-function relationships of the intact aIF2alpha subunit from the archaeon Pyrococcus abyssi. Biochemistry, 44(24), 8749-56. https://doi.org/10.1021/bi050373i

Christensen, B. S. & Sørensen, E. S. (2016). Structure, function and nutritional potential of milk osteopontin. International Dairy Journal, 57, 1-6. http://dx.doi.org/10.1016/j.idairyj.2016.02.034

Jensen, K. M. Ø., Christensen, M., Tyrsted, C., Bremholm, M. & Iversen, B. B. (2011). Structure, Size, and Morphology Control of Nanocrystalline Lithium Cobalt Oxide. Crystal Growth & Design, 11(3), 753-758. https://doi.org/10.1021/cg101271d

Hjorth, C. F., Norrman, M., Wahlund, P-O., Benie, A. J., Petersen, B. O., Jessen, C. M., Pedersen, T. Å., Vestergaard, K., Steensgaard, D. B., Pedersen, J. S., Naver, H., Hubálek, F., Poulsen, C. & Otzen, D. (2016). Structure, Aggregation, and Activity of a Covalent Insulin Dimer Formed During Storage of Neutral Formulation of Human Insulin. Journal of Pharmaceutical Sciences, 105(4), 1376-1386. https://doi.org/10.1016/j.xphs.2016.01.003

Zhou, B., Giavani, T., Bildsøe, H., Skibsted, J. & Jakobsen, H. J. (2005). Structure refinement of CsNO₃(II) by coupling of ¹⁴N MAS NMR experiments with WIEN2k DFT calculations. Chemical Physics Letters, 402, 133-137.

Meldgaard, S. R. A., Mortensen, H. L., Jorgensen, M. S. & Hammer, B. (2020). Structure prediction of surface reconstructions by deep reinforcement learning. Journal of Physics Condensed Matter, 32(40), [404005]. https://doi.org/10.1088/1361-648X/ab94f2

Nyborg, J., Nissen, P., Kjeldgaard, M., Thirup, S., Polekhina, G. & Clark, B. F. (1996). Structure of the ternary complex of EF-Tu: macromolecular mimicry in translation. Trends in Biochemical Sciences, 21(3), 81-2.

Andersen, C. B. F., Ballut, L., Johansen, J. S., Chamieh, H., Nielsen, K. H., Oliveira, C., Pedersen, J. S., Seraphin, B., LeHir, H. & Andersen, G. R. (2006). Structure of the exon junction core complex with a trapped DEAD-box ATPase bound to RNA. Science, 313, 1968-1972.

Muschiol, S., Erlendsson, S., Aschtgen, M-S., Oliveira, V., Schmieder, P., de Lichtenberg, C., Teilum, K., Boesen, T., Akbey, U. & Henriques-Normark, B. (2017). Structure of the competence pilus major pilin ComGC in Streptococcus pneumoniae. Journal of Biological Chemistry, 292(34), 14134-14146. https://doi.org/10.1074/jbc.M117.787671

Merte, L. R., Jorgensen, M. S., Pussi, K., Gustafson, J., Shipilin, M., Schaefer, A., Zhang, C., Rawle, J., Nicklin, C., Thornton, G., Lindsay, R., Hammer, B. & Lundgren, E. (2017). Structure of the SnO2(110)-(4 x 1) Surface. Physical Review Letters, 119(9), [096102]. https://doi.org/10.1103/PhysRevLett.119.096102

Yatime, L., Hein, K. L., Nilsson, J. & Nissen, P. (2011). Structure of the RACK1 dimer from Saccharomyces cerevisiae. Journal of Molecular Biology, 411(2), 486-98. https://doi.org/10.1016/j.jmb.2011.06.017

Pallesen, J., Dong, M., Besenbacher, F. & Kjems, J. (2009). Structure of the HIV-1 Rev response element alone and in complex with regulator of virion (Rev) studied by atomic force microscopy. F E B S Journal, 276(15), 4223-32. https://doi.org/10.1111/j.1742-4658.2009.07130.x

Kasper, C., Lunn, M-L., Liljefors, T., Gouaux, E., Jensen, J. E. & Kastrup, J. S. (2002). Structure of the GluR2 ligand binding core in complex with the agonist (S)-Des-Me-AMPA: Importance of isoxazole moiety and 5 substituent. F E B S Letters, 531, 173-178.

Mönig, H., Sun, J., Koroteev, Y. M., Bihlmayer, G., Wells, J., Chulkov, E. V., Pohl, K. & Hofmann, P. (2005). Structure of the (111) surface of bismuth: LEED analysis and first-principles calculations. Physical Review B, 72.

Mortensen, H. G., Jensen, G. V., Hansen, S. K., Vosegaard, T. & Pedersen, J. S. (2018). Structure of phospholipid mixed micelles (Bicelles) studied by small-angle X-ray scattering. Langmuir, 34(48), 14597-14607. https://doi.org/10.1021/acs.langmuir.8b02704

Oliveira, C. L. P. D., Jensen, S. J., Jørgensen, H. L., Knudsen, B., Tordrup, D. P., Oteri, F., Falconi, M., Koch, J. E., Desideri, A., Pedersen, J. S., Knudsen, B. R. & Andersen, F. F. (2010). Structure of nano-Scale Truncated Octahedral DNA Cages: Variation of Single-stranded Linker Regions and Influence on Assembly Yields. A C S Nano, 4.

Gebhard, W., Hochstrasser, K., Fritz, H., Enghild, J. J., Pizzo, S. V. & Salvesen, G. (1990). Structure of inter-alpha-inhibitor (inter-alpha-trypsin inhibitor) and pre-alpha-inhibitor: current state and proposition of a new terminology. Biological chemistry Hoppe-Seyler, 371 Suppl, 13-22.

Pedersen, J. S., Oliveira, C. L. P., Hübschmann, H. B., Arleth, L., Manniche, S., Kirkby, N. & Nielsen, H. M. (2012). Structure of immune stimulating complex matrices and immune stimulating complexes in suspension determined by small-angle X-ray scattering. Biophysical Journal, 102(10), 2372-2380. https://doi.org/10.1016/j.bpj.2012.03.071

Andersen, C. B. F., Becker, T., Blau, M., Anand, M., Halic, M., Balar, B., Mielke, T., Boesen, T., Pedersen, J. S., Spahn, C. M. T., Kinzy, T. G., Andersen, G. R. & Beckmann, R. (2006). Structure of eEF3 and the mechanism of transfer RNA release from the E-site. Nature, 443, 663-668.

Fredslund, F., Laursen, N. S., Roversi, P., Jenner, L. B., Oliveira, C. L. P., Pedersen, J. S., Nunn, M. A., Lea, S. M., Discipio, R., Sottrup-Jensen, L. & Andersen, G. R. (2008). Structure of and influence of a tick complement inhibitor on human complement component 5. Nature Immunology, 9(7), 753-60. https://doi.org/10.1038/ni.1625

Yatime, L., Mechulam, Y., Blanquet, S. & Schmitt, E. (2007). Structure of an archaeal heterotrimeric initiation factor 2 reveals a nucleotide state between the GTP and the GDP states. Proceedings of the National Academy of Sciences of the United States of America, 104(47), 18445-50. https://doi.org/10.1073/pnas.0706784104

Sanglas, L., Valnickova, Z., Arolas, J. L., Pallarés, I., Guevara, T., Solà, M., Kristensen, T., Enghild, J. J., Aviles, F. X. & Gomis-Rüth, F. X. (2008). Structure of activated thrombin-activatable fibrinolysis inhibitor, a molecular link between coagulation and fibrinolysis. Molecular Cell, 31(4), 598-606. https://doi.org/10.1016/j.molcel.2008.05.031

Tian, P., Boomsma, W., Wang, Y., Otzen, D., Jensen, M. H. & Lindorff-Larsen, K. (2015). Structure of a Functional Amyloid Protein Subunit Computed Using Sequence Variation. Journal of the American Chemical Society, 137(1), 22-25. https://doi.org/10.1021/ja5093634

Zeuthen, H., Kudernatsch, W., Peng, G., Merte, L. R., Ono, K., Lammich, L., Bai, Y., Grabow, L. C., Mavrikakis, M., Wendt, S. & Besenbacher, F. (2013). Structure of Stoichiometric and Oxygen-Rich Ultrathin FeO(111) Films Grown on Pd(111). Journal of Physical Chemistry C. https://doi.org/10.1021/jp4042638

Jensen, G. V., Shi, Q., Hernansanz, M. J., Oliveira, C. L. P. D., Deen, R., Almdal, K. & Pedersen, J. S. (2011). Structure of PEP-PEO block copolymer micelles: exploiting the complementarity of small-angle X-ray scattering and static light scattering. Journal of Applied Crystallography, 44, 473-482. https://doi.org/10.1107/S0021889811013343

Berndt, I., Pedersen, J. S. & Richtering, W. (2005). Structure of Multiresponsive 'Intelligent' Core-Shell Microgels. Journal of the American Chemical Society, 127, 9372-9373.

Manet, S., Lecchi, A., Imperor-Clerc, M., Zholobenko, V., Durand, D., Oliveira, C. L. P. D., Pedersen, J. S., Grillo, I., Meneau, F. & Rochas, C. (2011). Structure of Micelles of a Nonionic Block Copolymer Determined by SANS and SAXS. Journal of Physical Chemistry Part B: Condensed Matter, Materials, Surfaces, Interfaces & Biophysical, 115(39), 11318-113129. https://doi.org/10.1021/jp200212g

Fester, J., Sung, Z., Rodriguez-Fernandez, J. & Lauritsen, J. V. (2019). Structure of CoOx Thin Films on Pt(111) in Oxidation of CO. Journal of Physical Chemistry C, 123(28), 17407-17415. https://doi.org/10.1021/acs.jpcc.9b04537

Pedersen, B. P., Morth, J. P. & Nissen, P. (2010). Structure determination using poorly diffracting membrane protein crystals - Lessons from the H+ and Na+,K+-ATPases. Acta Crystallographica. Section D: Biological Crystallography, 66, 309-313.

Olsen, J. E., Frommen, C., Jensen, T. R., Riktor, M. D., Sørby, M. H. & Hauback, B. C. (2014). Structure and thermal properties of composites with RE-borohydrides (RE = La, Ce, Pr, Nd, Sm, Eu, Gd, Tb, Er, Yb or Lu) and LiBH₄. R S C Advances, 4(4), 1570-1582. https://doi.org/10.1039/c3ra44012e

Sljivancanin, Z., Andersen, M. & Hammer, B. (2011). Structure and stability of small H clusters on graphene. Physical Review B, 83(20).

Fester, J., Sun, Z., Rodríguez-Fernández, J., Walton, A. S. & Lauritsen, J. V. (2019). Structure and stability of Au-supported layered cobalt oxide nanoislands in ambient conditions. Journal of Physical Chemistry C, 123(14), 9176-9182. https://doi.org/10.1021/acs.jpcc.9b00771