Interdisciplinary Nanoscience Center

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Publications


We publish in a broad array of journals… To view list of publications related to nanoscience/technology by scientists associated with iNANO

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Kanjilal, A., Hansen, J. L., Gaiduk, P., Larsen, A. N., Normand, P., Dimitrakis, P., Tshoukalas, D., Cherkashin, N. & Claverie, A. (2005). Size and aerial density distributions of Ge nanocrystals in a SiO2 layer produced by molecular beam epitaxy and rapid thermal processing. Applied Physics A: Materials Science & Processing, 81, 363-366.
Teodori, L., Omer, M., Märcher, A., Skaanning, M. K., Andersen, V. L., Nielsen, J. S., Oldenburg, E., Lin, Y., Gothelf, K. V. & Kjems, J. (2022). Site-specific nanobody-oligonucleotide conjugation for super-resolution imaging. Journal of Biological Methods, 9(1), Article e159. https://doi.org/10.14440/jbm.2022.381
Jahn, K., Olsen, E. M., Nielsen, M. M., Tørring, T., Mohammadzadegan, R., Andersen, E. S., Gothelf, K. V. & Kjems, J. (2011). Site-Specific Chemical Labeling of Long RNA Molecules. Bioconjugate Chemistry, 22(1), 95-100. https://doi.org/10.1021/bc100422k
Trads, J. B., Tørring, T. & Gothelf, K. V. (2017). Site-Selective Conjugation of Native Proteins with DNA. Accounts of Chemical Research, 50(6), 1367-1374. https://doi.org/10.1021/acs.accounts.6b00618
Schmøkel, J., Voldum, A., Tsakiridou, G., Kuhlmann, M., Cameron, J., Sørensen, E. S., Wengel, J. & Howard, K. (2017). Site-selective conjugation of an anticoagulant aptamer to recombinant albumins and maintenance of neonatal Fc receptor binding. Nanotechnology, 28(20), Article 204004 . https://doi.org/10.1088/1361-6528/aa6a9b
Jakobsen, H. J., Bildsøe, H. K., Skibsted, J., Hansen, M. R., Brorson, M., Srinivasan, B. R., Srinivasan, B. R. & Bensch, W. (2009). Site Preferences of NH4+ in Its Solid Solutions with Cs2WS4 and Rb2WS4 from 14N, 33S, 87Rb, and 133Cs MAS NMR. Poster session presented at 50th Experimental NMR Conference, Asilomar, Pacific Groove, California, United States.
Jakobsen, H. J., Bildsøe, H. K., Skibsted, J., Hansen, M. R., Brorson, M., Srinivasan, B. R. & Bensch, W. (2009). Site Preferences of NH4+ in its Solid Solutions with Cs2WS4 and Rb2WS4 from Multinuclear Solid-State NMR. Inorganic Chemistry, 48(5), 1787-1789.
Jakobsen, H. J., Bildsøe, H. K., Skibsted, J., Brorson, M., Srinivasan, B. R., Bensch, W. & Hansen, M. R. (2009). Site Preferences of NH4+ in Its Solid Solutions with Cs2WS4 and Rb2WS4 from 14N, 33S, 87Rb, and 133Cs MAS NMR. Poster session presented at 50th Experimental NMR Conference, Asilomar, Pacific Groove, California, United States.
Tran, T. T., Herfort, D., Jakobsen, H. J. & Skibsted, J. (2011). Site Preferences of F-, Al3+ and Fe3+ Guest Ions in the Calcium Silicate Phases of Portland cement from Solid-State NMR Spectroscopy. In XIII International Congress on the Chemistry of Cement (ICCC) (Vol. Area 1, p. 13).
Tran, T. T., Herfort, D., Jakobsen, H. J. & Skibsted, J. (2009). Site Preferences of Fluoride Guest Ions in the Calcium Silicate Phases of Portland Cement from 29Si{19F} CP-REDOR NMR Spectroscopy. Journal of the American Chemical Society, 131(40), 14170-14171. https://doi.org/10.1021/ja905223d
Tran, T. T., Herfort, D., Jakobsen, H. J. & Skibsted, J. (2012). Site Preferences of F-, Al3+ and Fe3+ Guest Ions in the Calcium Silicate Phases of Portland cement from Solid-State NMR Spectroscopy (in russian). Cement and its applications, issue 6 for 2011(p. 54-58).
Knudsen, C. R. & Clark, B. F. C. (1996). Site-directed mutagenesis of Arg58 and Asp86 of elongation factor Tu from Escherichia coli: effects on the GTPase reaction and aminoacyl-tRNA binding. Protein Engineering, Design and Selection, 8(12), 1267-73.
Salazar, N., Rangarajan, S., Rodríguez-Fernández, J., Mavrikakis, M. & Lauritsen, J. V. (2020). Site-dependent reactivity of MoS2 nanoparticles in hydrodesulfurization of thiophene. Nature Communications, 11, Article 4369. https://doi.org/10.1038/s41467-020-18183-4
Andersen, M. Ø., Nygaard, J. V., Burns, J. S., Raarup, M. K., Nyengaard, J. R., Bünger, C., Besenbacher, F., Howard, K. A., Kassem, M. & Kjems, J. (2010). siRNA nanoparticle functionalization of nanostructured scaffolds enables controlled multilineage differentiation of stem cells. Molecular Therapy, 18(11), 2018-2027. https://doi.org/10.1038/mt.2010.166
Larsen, P. (2008). SiRNA-mediated knockdown and in vivo delivery into mesenteric small arteries.
Kristensen, M., Krüger, A. C. & Groothoff, N. (2010). Si photonic chips for biosensing.
zhang, Y., Friec, A. L., Sun, D. & Chen, M. (2023). Sinusoidal Stretchable Fibrous Electrodes Regulate Cardiac Contraction. Chemical Engineering Journal, 455, Article 140555. https://doi.org/10.1016/j.cej.2022.140555
Morgenstern, K., Lægsgaard, E. & Besenbacher, F. (2008). Sintering of cobalt nanoclusters on Ag(111) by sulfur: Formation of one-, two-, and three-dimensional cobalt sulfide. Surface Science, 602, 661-670. https://doi.org/10.1016/j.susc.2007.10.046
Shyam, P., Gjørup, F. H., Mørch, M. I., Laursen, A. P., Eikeland, A. Z., Kantor, I., Jørgensen, M. R. V. & Christensen, M. (2023). Sintering in seconds, elucidated by millisecond in situ diffraction. Applied Materials Today, 35, Article 101960. https://doi.org/10.1016/j.apmt.2023.101960
Søndergaard, M., Bøjesen, E. D., Borup, K. A., Christensen, S., Christensen, M. & Iversen, B. B. (2013). Sintering and annealing effects on ZnO microstructure and thermoelectric properties. Acta Materialia, 61(9), 3314-3323. https://doi.org/10.1016/j.actamat.2013.02.021
Bro̷chner, B. V., Zhang, X., Nielsen, J., Kjems, J., Otzen, D. E. & Malle, M. G. (2025). Single-vesicle Tracking of α-Synuclein Oligomers Reveals Pore Formation by a Three-Stage Model. ACS Nano, 19(36), 32108-32122. https://doi.org/10.1021/acsnano.5c04005
Ogilby, P. R. (2010). Singlet oxygen: there is still something new under the sun, and it is better than ever. Photochemical & Photobiological Sciences, 9, 1543-1560.
Ogilby, P. R. (2010). Singlet oxygen: there is indeed something new under the sun. Chemical Society Reviews, 39, 3181-3209.
Jensen, R. L., Arnbjerg, J., Birkedal, H. & Ogilby, P. R. (2011). Singlet Oxygen's Response to Protein Dynamics. Journal of the American Chemical Society, 133, 7166-7173. https://doi.org/10.1021/ja2010708
Gollmer, A., Arnbjerg, J., Blaikie, F. H., Pedersen, B. W., Breitenbach, T., Daasbjerg, K., Glasius, M. & Ogilby, P. R. (2011). Singlet Oxygen Sensor Green: Photochemical Behavior in Solution and in a Mammalian Cell. Photochemistry and Photobiology, 87, 671-679.
Bregnhøj, M., Westberg, M., Minaev, B. & Ogilby, P. R. (2017). Singlet Oxygen Photophysics in Liquid Solvents: Converging on a Unified Picture. Accounts of Chemical Research, 50(8), 1920-1927. https://doi.org/10.1021/acs.accounts.7b00169
Tørring, T., Helmig, S. W., Ogilby, P. R. & Gothelf, K. V. (2014). Singlet Oxygen in DNA Nanotechnology. Accounts of Chemical Research, 47(6), 1799-1806. https://doi.org/10.1021/ar500034y
Kuimova, M. K., Yahioglu, G. & Ogilby, P. R. (2009). Singlet Oxygen in a Cell: Spatially Dependent Lifetimes and Quenching Rate Constants. Journal of the American Chemical Society, 131, 332-340.
Ogilby, P. R. (2006). Singlet Oxygen. Photochemistry and Photobiology, 82, 1133-1135.
Fu, Y., Zeng, D., Chao, J., Jin, Y., Zhang, Z., Liu, H., Li, D., Ma, H., Huang, Q., Gothelf, K. V. & Fan, C. (2013). Single-step rapid assembly of DNA origami nanostructures for addressable nanoscale bioreactors. Journal of American Chemical Society, 135(2), 696-702. https://doi.org/10.1021/ja3076692
Nielsen, A. B., Hansen, M. R., Andersen, J. E. & Vosegaard, T. (2019). Single-Spin Vector Analysis of Strongly Coupled Nuclei in TOCSY NMR Experiments. Journal of Chemical Physics, 151(13), Article 134117. https://doi.org/10.1063/1.5123046
Christensen, M. N., Byskov-Nielsen, J., Christensen, B. H. & Balling, P. (2010). Single-shot ablation of sapphire by ultrashort laser pulses. Applied Physics A: Materials Science & Processing, 101(2), 279-282. https://doi.org/10.1007/s00339-010-5817-7
Huang, L. Z., Zhu, M., Liu, Z., Wang, Z. & Hansen, H. C. B. (2019). Single sheet iron oxide: An efficient heterogeneous electro-Fenton catalyst at neutral pH. Journal of Hazardous Materials, 364, 39-47. https://doi.org/10.1016/j.jhazmat.2018.10.026
Schulz, F. H., Dreisler, M. W., Koylyu, D., Valero, J., Malle, M. G., Civit, L., Kjems, J. & Hatzakis, N. S. (2026). Single-Particle Tracking and Positional Phenotyping Reveal Variant-Specific Early Checkpoints in SARS-CoV-2 Cell Entry. ACS Applied Bio Materials, 9(16), 7235-7242. https://doi.org/10.1021/acsabm.6c00883
Rosen, C. B., Rodriguez-Larrea, D. & Bayley, H. (2014). Single-molecule site-specific detection of protein phosphorylation with a nanopore. Nature Biotechnology, 32(2), 179-181. https://doi.org/10.1038/nbt.2799
Evans, D. C. (2017). Single-molecule optical microscopy for the investigation of Staphylococcus aureus biofilm formation.
Tsang, E., Lund, L. M., Birkedal, V. & Gothelf, K. V. (2026). Single-Molecule Nucleic Acid Detection with a Reconfigurable Rotating DNA Origami Nanodevice. ACS Nano, 20(5), 4607-4616. https://doi.org/10.1021/acsnano.5c22080
Okholm, K. R., Nooteboom, S. W., Vinther, J. N., Lamberti, V., Dey, S., Andersen, E. S., Zijlstra, P. & Sutherland, D. S. (2024). Single-Molecule Multivalent Interactions Revealed by Plasmon-Enhanced Fluorescence. ACS Nano, 18(52), 35429-35442. https://doi.org/10.1021/acsnano.4c12600
Krüger, A., Birkedal, V., Raarup, M. K., Kristensen, M., Kjems, J. & Besenbacher, F. (2006). Single-molecule Microscopy on Nucleic Acids. Poster session presented at NANOBIO Summer School "The live cell from nano to micro", Cargese, Corse, France.
Birkedal, V., Dong, M., Golas, M. M., Sander, B., Andersen, E. S., Gothelf, K. V., Besenbacher, F. & Kjems, J. (2011). Single molecule microscopy methods for the study of DNA origami structures. Microscopy Research and Technique, 74(7), 688-698. https://doi.org/10.1002/jemt.20962
Burmeister, M. (2026). Single-molecule kinetics from superresolved colocalization microscopy. [PhD dissertation, Aarhus University].
Jepsen, M. B., Beerens, N., Nechyponuk-Zloy, V., Besenbacher, F., Kjems, J. & Birkedal, V. (2011). Single molecule FRET microscopy studies of tRNA annealing onto the HIV-1 genome. Poster session presented at International Bunsen Discussion Meeting Förster resonance energy transfer in life science, Germany.
Birkedal, V., Krüger, A., Raarup, M. K., Kristensen, M., Kjems, J. & Besenbacher, F. (2006). Single molecule FRET microscopy on G-quadruplex DNA structures. Poster session presented at Single Molecule Picoquant Workshop, Berlin, Germany.
Krüger, A., Bukowy, Z., Lutzelberger, M., Stevnsner, T., Kristensen, M., Kjems, J., Besenbacher, F. & Raarup, M. K. (2005). Single-molecule FRET microscopy on DNA telomeres. Poster session presented at Bio-image summer school at ENS, Paris, France.
Birkedal, V., Krüger, A. C. & Besenbacher, F. (2011). Single Molecule FRET Microscopy of Immobilized DNA Molecules: Keeping Track of Dye Integrity and Stoichiometry. Biophysical Journal, 100(3), 75a.
Kristoffersen, E. L., Aznauryan, M. & Birkedal, V. (2018). Single-Molecule FRET Investigations of Tandem Human Telomeric G-Quadruplex Structures. Biophysical Journal, 114(3 ), 597a. https://doi.org/10.1016/j.bpj.2017.11.3261
Krüger, A. C. & Birkedal, V. (2013). Single molecule FRET data analysis procedures for FRET efficiency determination: Probing the conformations of nucleic acid structures. Methods, 64, 36–42 . https://doi.org/10.1016/j.ymeth.2013.04.001
Jepsen, M. DE., Sørensen, R. S., Andersen, E. S., Kjems, J. & Birkedal, V. (2015). Single Molecule FRET Analysis of the Closed and Open States of a DNA Origami Box. Biophysical Journal, 108(2, suppl. 1), 175a. https://doi.org/10.1016/j.bpj.2014.11.968
Hildebrandt, L., Preus, S., Zhang, Z., Voigt, N. V., Gothelf, K. V. & Birkedal, V. (2014). Single Molecule FRET Analysis of the 11 Discrete Steps of a DNA Actuator. Journal of the American Chemical Society, 136(25), 8957-8962. https://doi.org/10.1021/ja502580t
Hildebrandt, L. (2015). Single molecule fluorescence microscopy studies of man-made DNA nanostructures.

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Lise Refstrup Linnebjerg Pedersen