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Interdisciplinary Nanoscience Center

Danish Center for Ultrahigh Field NMR Spectroscopy

Publications

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Andreasen, M., Nielsen, S. B., Runager, K., Christiansen, G., Nielsen, N. C., Enghild, J. J. & Otzen, D. (2012). Polymorphic Fibrillation of the Destabilized Fourth Fasciclin-1 Domain Mutant A₅₄6T of the Transforming Growth Factor-β-induced Protein (TGFBIp) Occurs through Multiple Pathways with Different Oligomeric Intermediates. Journal of Biological Chemistry, 287(41), 34730-34742. https://doi.org/10.1074/jbc.M112.379552

Bjerring, M. M., Jensen, B. P., Oschkinat, H. H., Akbey, U. & Nielsen, N. C. (2012). Rapid solid-state NMR of deuterated proteins by interleaved cross-polarization from ¹ H and ² H nuclei. Journal of Magnetic Resonance, 214, 324-328. https://doi.org/10.1016/j.jmr.2011.10.020

Vinther, J. M., Nielsen, A. B., Bjerring, M., van Eck, E., Kentgens, A., Khaneja, N. & Nielsen, N. C. (2012). Refocused continuous-wave decoupling: A new approach to heteronuclear dipolar decoupling in solid-state NMR spectroscopy. Journal of Chemical Physics, 137(21), 214202. https://doi.org/10.1063/1.4768953

Bundgaard, E., Hagemann, O., Bjerring, M., Nielsen, N. C., Andreasen, J. W., Andreasen, B. & Krebs, F. C. (2012). Removal of Solubilizing Side Chains at Low Temperature: A New Route to Native Poly(thiophene). Macromolecules, 45(8), 3644-3646. https://doi.org/10.1021/ma300075x

Hansen, B. R. S., Jensen, T. R., Skibsted, J. & Bomholdt Ravnsbæk, D. (2012). Reversibility and Decomposition Reactions in the LiBH4-Al Composite System. Poster session presented at Danish Crystallographic Meeting and DanScatt Meeting, Odense, Denmark.

Kalashnyk, N., Nielsen, J. T., Nielsen, E. H., Skrydstrup, T., Otzen, D., Lægsgaard, E., Wang, C., Besenbacher, F., Nielsen, N. C. & Linderoth, T. R. (2012). Scanning tunneling microscopy reveals single-molecule insights into the self-assembly of amyloid fibrils. A C S Nano, 6(8), 6882-6889. https://doi.org/10.1021/nn301708d

Nielsen, A. B., Nielsen, N. C., Gath, J., Székely, K., Ernst, M. & Meier, B. H. (2012). Simultaneous acquisition of PAR and PAIN spectra. Journal of Biomolecular N M R, Volume 52(Issue 4), 283-288. https://doi.org/10.1007/s10858-012-9616-7

Tran, T. T., Herfort, D., Jakobsen, H. J. & Skibsted, J. (2012). Site Preferences of F-, Al3+ and Fe3+ Guest Ions in the Calcium Silicate Phases of Portland cement from Solid-State NMR Spectroscopy (in russian). Cement and its applications, issue 6 for 2011(p. 54-58).

Tran, T. T. & Skibsted, J. (2012). Structural environments of fluoride ions in C-S-H phases of Portland cement from 19F and 29Si MAS NMR spectroscopy. Paper presented at 18th IBAUSIL, Weimar, Germany.

Sarup, P. M., Pedersen, S. M., Nielsen, N. C., Malmendal, A. & Loeschcke, V. (2012). The metabolic profile of long-lived Drosophila melanogaster. PLoS One, 7(10), e47461. https://doi.org/10.1371/journal.pone.0047461

Ley, M. B., Bomholdt Ravnsbæk, D., Filinchuk, Y., Lee, Y.-S., Janot, R., Cho, Y. W., Skibsted, J. & Jensen, T. R. (2012). Two new lithium ion conductors: with isolated tetranuclear anionic clusters LiM(BH4)3Cl (M = Ce, La). Poster session presented at 10th iNANO Annual Meeting, Aarhus, Denmark.

Wittenborn, T., Nielsen, T., Nygaard, J. V., Larsen, E. K. U., Thim, T., Rydtoft, L. M., Vorup-Jensen, T., Kjems, J., Nielsen, N. C., Horsman, M. R. & Falk, E. (2012). Ultra-High-Field DCE-MRI of Angiogenesis in a Novel Angiogenesis Mouse Model. Journal of Magnetic Resonance Imaging, 35(3), 703-710. https://doi.org/10.1002/jmri.22855

Sanggaard, K. W., Danielsen, C. C., Wogensen, L., Vinding, M. S., Rydtoft, L. M., Mortensen, M. B., Karring, H., Nielsen, N. C., Wang, T., Thøgersen, I. B. & Enghild, J. J. (2012). Unique structural features facilitate lizard tail autotomy. PLoS One, 7(12), e51803. https://doi.org/10.1371/journal.pone.0051803

Tamiola, K. & Mulder, F. A. A. (2012). Using NMR chemical shifts to calculate the propensity for structural order and disorder in proteins. Biochemical Society. Transactions, 40(5), 1014-20. https://doi.org/10.1042/BST20120171

Pedersen, S. M., Nebel, C., Nielsen, N. C., Andersen, H. J., Olsson, J., Simrén, M., Öhman, L., Svensson, U., Bertram, H. C. S. & Malmendal, A. (2011). A GC-MS-based metabonomic investigation of blood serum from irritable bowel syndrome patients undergoing intervention with acidified milk products. European Food Research and Technology, 233(6), 1013-1021. https://doi.org/10.1007/s00217-011-1599-1

Ley, M. B., Bomholdt Ravnsbæk, D., Filinchuk, Y., Lee, Y.-S., Janot, R., Cho, Y. W., Skibsted, J. & Jensen, T. R. (2011). A little bit of LiCl does a lot for a borohydride: Hydrogen storage and Li ion conductivity combined.

Tran, T. T., López, S. A. B., Herfort, D. & Skibsted, J. (2011). Characterization of the Network Structure of Alkali-activated Aluminosilicate Binders by Single- and Double-Resonance ²⁹Si{²⁷Al} MAS NMR Experiments. In 10th International Congress for Applied Mineralogy (ICAM)

Steenberg, M., Herfort, D., Poulsen, S. L., Skibsted, J. & Damtoft, J. S. (2011). Composite cement based on Portland cement clinker, limestone and calcined clay. XIII International Congress on the Chemistry of Cement, 97.

Karasawa, A., Erkens, G. B., Berntsson, R. P.-A., Otten, R., Schuurman-Wolters, G. K., Mulder, F. A. A. & Poolman, B. (2011). Cystathionine β-synthase (CBS) domains 1 and 2 fulfill different roles in ionic strength sensing of the ATP-binding cassette (ABC) transporter OpuA. Journal of Biological Chemistry, 286(43), 37280-91. https://doi.org/10.1074/jbc.M111.284059

Vestergaard-Poulsen, P., Wegener, G., Hansen, B., Bjarkam, C. R., Blackband, S. J., Nielsen, N. C. & Jespersen, S. N. (2011). Diffusion-weighted MRI and quantitative biophysical modeling of hippocampal neurite loss in chronic stress. PLoS One, 6(7), e20653. https://doi.org/10.1371/journal.pone.0020653

Jakobsen, H. J., Bildsøe, H. K., Gan, Z. & Brey, W. W. (2011). Experimental aspects in acquisition of wide bandwidth solid-state MAS NMR spectra of low-γ nuclei with different opportunities on two commercial NMR spectrometers. Journal of Magnetic Resonance, 211(2), 195-206. https://doi.org/10.1016/j.jmr.2011.05.015

Runager, K., Basaiawmoit, R. V., Deva, T., Andreasen, M., Valnickova, Z., Sørensen, C. S., Karring, H., Thøgersen, I. B., Christiansen, G., Underhaug, J., Kristensen, T., Nielsen, N. C., Klintworth, G. K., Otzen, D. E. & Enghild, J. J. (2011). Human Phenotypically Distinct TGFBI Corneal Dystrophies Are Linked to the Stability of the Fourth FAS1 Domain of TGFBIp. Journal of Biological Chemistry, 286(7), 4951-8. https://doi.org/10.1074/jbc.M110.181099

López, S. A. B., Herfort, D. & Skibsted, J. (2011). Hybrid binders based on alkali sulfate-activated Portland clinker and metakaolin. XIII International Congress on the Chemistry of Cement, 141.

Nielsen, T. K., Polanski, M., Zasada, D., Javadian, P., Besenbacher, F., Bystrzycki, J., Skibsted, J. & Jensen, T. R. (2011). Improved Hydrogen Storage Kinetics of Nanoconfined NaAlH₄ Catalyzed with TiCl₃ Nanoparticles. ACS Nano, 5(5), 4056-4064. https://doi.org/10.1021/nn200643b

Bertelsen, K., Vad, B., Nielsen, E. H. T., Hansen, S. K., Skrydstrup, T., Otzen, D., Vosegaard, T. & Nielsen, N. C. (2011). Long-term-stable ether-lipid vs conventional ester-lipid bicelles in oriented solid-state NMR: altered structural information in studies of antimicrobial peptides. Journal of Physical Chemistry Part B: Condensed Matter, Materials, Surfaces, Interfaces & Biophysical, 115(8), 1767-1774. https://doi.org/10.1021/jp110866g

Meinema, A. C., Laba, J. K., Hapsari, R. A., Otten, R., Mulder, F. A. A., Kralt, A., van den Bogaart, G., Lusk, C. P., Poolman, B. & Veenhoff, L. M. (2011). Long unfolded linkers facilitate membrane protein import through the nuclear pore complex. Science, 333(6038), 90-3. https://doi.org/10.1126/science.1205741

Nielsen, A. B., Jain, S. K. & Nielsen, N. C. (2011). Low-power homonuclear dipolar recoupling using supercycled symmetry-based and exponentially-modulated pulse sequences. Chemical Physics Letters, 503, 310-315.

Pedersen, S. M., Samuelsson, A., Svensson, U., Rafter, J., Petterson, S., Nielsen, N. C., Bertram, H. C. & Malmendal, A. (2011). Metabonomic Effects of Strain and Delivering Method in Probiotic Fed Mice Induced with Mild Colitis. World Journal of Gastroenterology.

Jansang, B. & Skibsted, J. (2011). Modelling of guest-ion incorporation in alite and belite and the hydroxylation of their surfaces by periodic Density Functional Theory calculations. XIII International Congress on the Chemistry of Cement, 337.

Tamiola, K. & Mulder, F. A. A. (2011). ncIDP-assign: a SPARKY extension for the effective NMR assignment of intrinsically disordered proteins. Bioinformatics (Online), 27(7), 1039-40. https://doi.org/10.1093/bioinformatics/btr054

Malmendal, A., Amoresano, C., Trotta, R., Lauri, I., De Tito, S., Novellino, E. & Randazzo, A. (2011). NMR spectrometers as "magnetic tongues": prediction of sensory descriptors in canned tomatoes. Journal of Agricultural and Food Chemistry, 59(20), 10831-8. https://doi.org/10.1021/jf203803q

Vinther, J. M. & Nielsen, N. C. (2011). Notes on NMR spectroscopy: an introduction to the principles of NMR spectroscopy. Kemisk Institut, Aarhus Universitet.

Wei, D., Akbey, U., Jensen, B. P., Oschkinat, H., Reif, B., Bjerring, M. & Nielsen, N. C. (2011). Optimal 2H rf pulses and 2H-13C cross-polarization methods for solid-state 2H MAS NMR of perdeuterated proteins. The Journal of Physical Chemistry Letters, 2(11), 1289-1294. https://doi.org/10.1021/jz200511b

Vinding, M. S., Maximov, I., Tosner, Z., Jespersen, S. N. & Nielsen, N. C. (2011). Optimal Control Theory in Magnetic Resonance Imaging: Global Optima for 2DRF pulses. Poster session presented at 32nd Annual Danish NMR Meeting, Korsør, Denmark.

Mulder, F. A. A., Otten, R. & Scheek, R. M. (2011). Origin and removal of mixed-phase artifacts in gradient sensitivity enhanced heteronuclear single quantum correlation spectra. Journal of Biomolecular N M R, 51(1-2), 199-207. https://doi.org/10.1007/s10858-011-9554-9

Kehlet, C., Nielsen, J. T., Tosner, Z. & Nielsen, N. C. (2011). Resolution-Enhanced Solid-State NMR 13C-13C Correlation Spectroscopy by Optimal Control Dipolar-Driven Spin-State-Selective Coherence Transfer. The Journal of Physical Chemistry Letters, 2, 543-547.

Weber, M., Schneider, D., Prodöhl, A., Dreher, C., Becker, C., Underhaug, J., Svane, A. S. P., Malmendal, A., Nielsen, N. C. & Otzen, D. (2011). SDS-facilitated in vitro formation of a transmembrane B-type cytochrome is mediated by changes in local pH. Journal of Molecular Biology, 407(4), 594-606. https://doi.org/10.1016/j.jmb.2011.02.005

Bak, M., Rasmussen, J. T. & Nielsen, N. C. (2011). SIMPSON - An important driver for numerical simulations in solid-state NMR spectroscopy. Journal of Magnetic Resonance, 213(2), 401-403. https://doi.org/10.1016/j.jmr.2011.08.002

Tran, T. T., Herfort, D., Jakobsen, H. J. & Skibsted, J. (2011). Site Preferences of F^-, Al³⁺ and Fe³⁺ Guest Ions in the Calcium Silicate Phases of Portland cement from Solid-State NMR Spectroscopy. In XIII International Congress on the Chemistry of Cement (ICCC) (Vol. Area 1, p. 13).

Bomholdt Ravnsbæk, D., Frommen, C., Reed, D., Filinchuk, Y., Sørby, M., Hauback, B., Jakobsen, H. J., Book, D., Besenbacher, F., Skibsted, J. & Jensen, T. R. (2011). Structural studies of lithium zinc borohydride by neutron powder diffraction, Raman and NMR Spectroscopy. Journal of Alloys and Compounds, 509S, S698-S704.

Sevelsted, T. F., Skibsted, J., Jakobsen, H. J. & Herfort, D. (2011). ¹³C MAS NMR spectroscopy in cement science: Characterization of limestone - Portland cements and carbonated C-S-H phases by ¹³C, ²⁷Al and ²⁹Si MAS NMR. In Proceedings of 31st cement and concrete science conference

Pardo, P., Christensen, P. V., Keiding, K., Herfort, D. & Skibsted, J. (2011). Surface properties of calcined clays and their dispersion in blended Portland cement pastes. XIII International Congress on the Chemistry of Cement, 51.

Jakobsen, H. J., Bildsøe, H. K., Skibsted, J., Brorson, M., Hung, I. & Gan, Z. (2011). Synthesis of ¹⁷O-Labeled Cs₂WO₄ and Its Ambient- and Low-Temperature Solid-State ¹⁷O MAS NMR Spectra. Inorganic Chemistry, 50, 7676-7684. https://doi.org/10.1021/ic200722a

Jiang, L., Svane, A. S. P., Sørensen, H. P., Jensen, J. K., Hosseini, M., Chen, Z., Weydert, C., Nielsen, J. T., Christensen, A., Yuan, C., Jensen, K. J., Nielsen, N. C., Malmendal, A., Huang, M. & Andreasen, P. (2011). The binding mechanism of a peptidic cyclic serine protease inhibitor. International Journal of Molecular Biology, 412(2), 235-50. https://doi.org/10.1016/j.jmb.2011.07.028

Pedersen, M. Ø., Linnanto, J., Frigaard, N.-U., Nielsen, N. C. & Miller, M. (2010). A model of the protein-pigment baseplate complex in chlorosomes of photosynthetic green bacteria. Photosynthesis Research, 104(2-3), 233-243. https://doi.org/10.1007/s11120-009-9519-y

Maximov, I. I., Salomon, J., Turinici, G. & Nielsen, N. C. (2010). A smoothing monotonic convergent optimal control algorithm for nuclear magnetic resonance pulse sequence design. Journal of Chemical Physics, 132(8). https://doi.org/10.1063/1.3328783

Jakobsen, H. J., Bildsøe, H. K., Skibsted, J., Brorson, M., Gor'kov, P. & Gan, Z. (2010). A strategy for acquisition and analysis of complex natural-abundance ³³S solid-state NMR spectra of a disordered tetrathio transition-metal anion. Journal of Magnetic Resonance, 202, 173-179. https://doi.org/10.1016/j.jmr.2009.11.001

Laustsen, C., Ringgaard, S., Pedersen, M. & Nielsen, N. C. (2010). Binomial Sequence for Selective Quadrupolar 23Na in Vitro and in Vivo NMR and MRI. Abstract from ISMRM, Stockholm, Sweden.

Bjerring, M., Nielsen, A. B., Tosner, Z. & Nielsen, N. C. (2010). Broadband heteronuclear dipolar recoupling without 1H decoupling in solid-state NMR using simple cross-polarization methods. Chemical Physics Letters, 494(4-6), 326-330. https://doi.org/10.1016/j.cplett.2010.06.018

Nielsen, A. B., Straasø, L. A., Nieuwkoop, A. J., Rienstra, C. M., Bjerring, M. & Nielsen, N. C. (2010). Broadband Heteronuclear Solid-State NMR Experiments by Exponentially Modulated Dipolar Recoupling without Decoupling. The Journal of Physical Chemistry Letters, 1((13)), 1952-1958.

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Lise Refstrup Linnebjerg Pedersen