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Interdisciplinary Nanoscience Center

Danish Center for Ultrahigh Field NMR Spectroscopy

Publications

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Equbal, A., Paul, S., Mithu, V. S., Madhu, P. K. & Nielsen, N. C. (2014). Efficient Heteronuclear Decoupling in MAS Solid-State NMR using Non-rotor-synchronized rCW Irradiation. Journal of Magnetic Resonance, 246, 104-109. https://doi.org/10.1016/j.jmr.2014.07.006

Basse, K., Jain, S. K., Bakharev, O. N. & Nielsen, N. C. (2014). Efficient Polarization Transfer between Spin-1/2 and ¹⁴N Nuclei in Solid-State MAS NMR Spectroscopy. Journal of Magnetic Resonance, 244, 85-89. https://doi.org/10.1016/j.jmr.2014.04.017

Bjerring, M. & Nielsen, N. C. (2014). Forskningscenter: inSPIN Center for Insoluble Protein Structures. Biozoom, 2014(2), 1-9. http://www.biokemi.org/biozoom/issues/534/articles/2453

Penner, R., Andersen, E. S., Jensen, J. L., Kantcheva, A. K., Bublitz, M., Nissen, P., Rasmussen, A. M. H., Svane, K. L., Hammer, B., Rezazadegan, R., Nielsen, N. C., Nielsen, J. T. & Andersen, J. E. (2014). Hydrogen bond rotations as a uniform structural tool for analyzing protein architecture. Nature Communications, 5, Article 5803. https://doi.org/10.1038/ncomms6803

Hansen, S. K., Vestergaard, M., Thøgersen, L., Schiøtt, B., Nielsen, N. C. & Vosegaard, T. (2014). Lipid Dynamics Studied by Calculation of 31P Solid-State NMR Spectra Using Ensembles from Molecular Dynamics Simulations. Journal of Physical Chemistry Part B: Condensed Matter, Materials, Surfaces, Interfaces & Biophysical, 118(19), 5119-5129. https://doi.org/10.1021/jp5000304

Jain, S. K., Nielsen, A. B., Hiller, M., Handel, L., Ernst, M., Oschkinat, H., Akbey, Ü. & Nielsen, N. C. (2014). Low-power polarization transfer between deuterons and spin-1/2 nuclei using adiabatic (RESPIRATION)CP in solid-state NMR. Physical Chemistry Chemical Physics, 16(7), 2827-30. https://doi.org/10.1039/c3cp54419b

Sørensen, M. K., Bakharev, O., Jensen, O., Jakobsen, H. J., Skibsted, J. & Nielsen, N. C. (2014). Magic-angle spinning solid-state multinuclear NMR on low-field instrumentation. Journal of Magnetic Resonance, 238, 20-25. https://doi.org/10.1016/j.jmr.2013.10.015

Vosegaard, T. & Nielsen, N. C. (2014). NMR Investigations of the Structure and Dynamics of Antimicrobial Peptides: The Peptaibol Alamethicin. In F. Separovic & A. Naito (Eds.), Advances in Biological Solid-State NMR: Proteins and Membrane-Active Peptides (pp. 267-286). Royal Society of Chemistry. https://doi.org/10.1039/9781782627449-00267

Sørensen, M. K., Vinding, M. S., Bakharev, O. N., Nesgaard, T., Jensen, O. & Nielsen, N. C. (2014). NMR Sensor for Onboard Ship Detection of Catalytic Fines in Marine Fuel Oil. Analytical Chemistry, 86(15), 7205-7208. https://doi.org/10.1021/ac5014496

Kirkegaard, K., Svane, A. S. P., Nielsen, J. S., Hindkjær, J. J., Nielsen, N. C. & Ingerslev, H. J. (2014). Nuclear magnetic resonance metabolomic profiling of Day 3 and 5 embryo culture medium does not predict pregnancy outcome in good prognosis patients: a prospective cohort study on single transferred embryos. Human reproduction (Oxford, England), 29(11), 2413-20. https://doi.org/10.1093/humrep/deu236

Ghodke, S. D., Jensen, G. V., Svane, A. S. P., Weise, K., Søndergaard, A., Behrens, M. A., Pedersen, J. S., Nielsen, N. C., Pedersen, J. S., Winter, R. & Otzen, D. (2014). Polymorphism, metastable species and interconversion: the many states of glucagon fibrils. In V. Uversky & Y. Lyubchenko (Eds.), Bio-nanoimaging: Protein misfolding and aggregation (pp. 373-386). Elsevier. https://doi.org/10.1016/B978-0-12-394431-3.00034-1

Kosicka, I., Kristensen, T., Bjerring, M., Thomsen, K., Scavenius, C., Enghild, J. J. & Nielsen, N. C. (2014). Preparation of Uniformly 13C,15N-Labeled Recombinant Human Amylin for Solid-State NMR Investigation. Protein Expression and Purification, 99, 119-130. https://doi.org/10.1016/j.pep.2014.04.002

Akbey, Ü., Nieuwkoop, A. J., Wegner, S., Voreck, A., Kunert, B., Bandara, P., Engelke, F., Nielsen, N. C. & Oschkinat, H. (2014). Quadruple-resonance magic-angle spinning NMR spectroscopy of deuterated solid proteins. Angewandte Chemie, 53(9), 2438-42. https://doi.org/10.1002/anie.201308927

Equbal, A., Paul, S., Mithu, V. S., Vinther, J. M., Nielsen, N. C. & Madhu, P. K. (2014). rTPPM: Towards Improving Solid-State NMR Two-Pulse Phase-Modulation Heteronuclear Dipolar Decoupling Sequence by Refocusing. Journal of Magnetic Resonance, 244, 68-73. https://doi.org/10.1016/j.jmr.2014.04.009

Laustsen, C., Bowen, S., Sloth Vinding, M., Nielsen, N. C. & Ardenkjær-Larsen, J. H. (2014). Storage of magnetization as singlet order by optimal control designed pulses. Magnetic Resonance in Medicine, 71(3), 921–926. https://doi.org/10.1002/mrm.24733

Risør, M. W., Poulsen, E. T., Thomsen, L. R., Dyrlund, T. F., Nielsen, T. A., Nielsen, N. C., Sanggaard, K. W. & Enghild, J. J. (2014). The autolysis of human HtrA1 is governed by the redox state of its N-terminal domain. Biochemistry, 53(23), 3851-3857. https://doi.org/10.1021/bi401633w

Nielsen, J. T. & Nielsen, N. C. (2014). VirtualSpectrum, a Tool for Simulating Peak List for Multiple-Dimensional NMR Spectra. Journal of Biomolecular N M R, 60(1), 51-66. https://doi.org/10.1007/s10858-014-9851-1

Nielsen, A. B., Jain, S. K., Ernst, M., Meier, B. H. & Nielsen, N. C. (2013). Adiabatic Rotor-Echo-Short-Pulse-Irradiation Mediated Cross-Polarization. Journal of Magnetic Resonance, 237, 147-151. https://doi.org/10.1016/j.jmr.2013.09.002

Roodbeen, R., Paaske, B., Jiang, L., Jensen, J. K., Christensen, A., Nielsen, J. T., Huang, M., Mulder, F. A. A., Nielsen, N. C., Andreasen, P. & Jensen, K. J. (2013). Bicyclic Peptide Inhibitor of Urokinase-Type Plasminogen Activator: Mode of Action. ChemBioChem, 14(16), 2179–2188. https://doi.org/10.1002/cbic.201300335

Zhang, S., Andreasen, M., Nielsen, J. T., Liu, L., Nielsen, E. H., Song, J., Ji, G., Sun, F., Skrydstrup, T., Besenbacher, F., Nielsen, N. C., Otzen, D. E. & Dong, M. (2013). Coexistence of ribbon and helical fibrils originating from hIAPP20-29 revealed by quantitative nanomechanical atomic force microscopy. PNAS (Proceedings of the National Academy of Sciences of the United States of America), 110(8), 2798-2803. https://doi.org/10.1073/pnas.1209955110

Bjerring, M., Jain, S. K., Jensen, B. P., Vinther, J. M. & Nielsen, N. C. (2013). Designing dipolar recoupling and decoupling experiments for biological solid-state NMR using interleaved continuous wave and rf pulse irradiation. Accounts of Chemical Research, 46(9), 2098-2107. https://doi.org/10.1021/ar300329g

Vinding, M. S., Laustsen, C., Maximov, I., Søgaard, L. V., Ardenkjær-Larsen, J. H. & Nielsen, N. C. (2013). Dynamic nuclear polarization and optimal control spatial-selective 13C MRI and MRS. Journal of Magnetic Resonance, 227, 57-61. https://doi.org/10.1016/j.jmr.2012.12.002

Vinding, M. S., Maximov, I., Tosner, Z. & Nielsen, N. C. (2013). Fast monotonic convergent optimal control algorithm for 2D RF pulses mitigating B0 and B1 inhomogeneities. Poster session presented at ISMRM 2013, Salt Lake City, United States.

Kirkegaard, K., Svane, A. S. P., Hindkjær, J. J., Nielsen, N. C. & Ingerslev, H. J. (2013). Metabolic profiles of spent culture media does not predict pregnancy outcome. Abstract from European Society of Human Reproduction and Embryology 29th annual meeting, London, United Kingdom.

Malmendal, A., Sørensen, J. G., Overgaard, J., Holmstrup, M., Nielsen, N. C. & Loeschcke, V. (2013). Metabolomic analysis of the selection response of Drosophila melanogaster to environmental stress: are there links to gene expression and phenotypic traits? Naturwissenschaften, 100, 417–427.

Underhaug, J., Koldsø, H., Runager, K., Nielsen, J. T., Sørensen, C. S., Kristensen, T., Otzen, D., Karring, H., Malmendal, A., Schiøtt, B., Enghild, J. J. & Nielsen, N. C. (2013). Mutation in transforming growth factor beta induced protein associated with granular corneal dystrophy type 1 reduces the proteolytic susceptibility through local structural stabilization. BBA General Subjects, 1834(12), 2812–2822. https://doi.org/10.1016/j.bbapap.2013.10.008

Kehlet, C., Del Federico, E., Schahbaz, H., Catalano, A., Dittmer, J. & Nielsen, N. C. (2013). Non-invasive characterization of polymeric materials in relation to art conservation using unilateral NMR combined with multivariate data analysis. Analytical Methods, 5(17), 4480-4486. https://doi.org/10.1039/c3ay40650d

Laustsen, C., Bowen, S., Vinding, M. S., Nielsen, N. C. & Ardenkjær-Larsen, J. H. (2013). OPTIMAL CONTROL SINGLET STATE STORAGE FOR CLINICAL MR SYSTEMS. Abstract from ISMRM 2013, Salt Lake City, United States.

Vinther, J. M., Khaneja, N. & Nielsen, N. C. (2013). Robust and Efficient 19F Heteronuclear Dipolar Decoupling using Refocused Continuous-Wave Rf Irradiation. Journal of Magnetic Resonance. https://doi.org/10.1016/j.jmr.2012.11.003

Hansen, L., Unmack Larsen, E. K., Nielsen, E. H., Iversen, F., Liu, Z., Thomsen, K., Pedersen, M., Skrydstrup, T., Nielsen, N. C., Ploug, M. & Kjems, J. (2013). Targeting of peptide conjugated magnetic nanoparticles to urokinase plasminogen activator receptor (uPAR) expressing cells. Nanoscale, 5, 8192-8201. https://doi.org/10.1039/c3nr32922d

Nielsen, S. B., Macchi, F., Raccosta, S., Langkilde, A. E., Giehm, L., Kyrsting, A., Svane, A. S. P., Manno, M., Christiansen, G., Nielsen, N. C., Oddershede, L., Vestergaard, B. & Otzen, D. (2013). Wildtype and A30P Mutant Alpha-Synuclein Form Different Fibril Structures. P L o S One, 8(7), Article e67713. https://doi.org/10.1371/journal.pone.0067713

Larsen, E. K. U., Nielsen, T., Wittenborn, T., Rydtoft, L. M., Lokanathan, A. R., Hansen, L., Østergaard, L., Kingshott, P., Howard, K. A., Besenbacher, F., Nielsen, N. C. & Kjems, J. (2012). Accumulation of magnetic iron oxide nanoparticles coated with variably sized polyethylene glycol in murine tumors. Nanoscale, 4(7), 2352-2361 . https://doi.org/10.1039/C2NR11554A

Loening, N. M., Bjerring, M., Nielsen, N. C. & Oschkinat, H. (2012). A comparison of NCO and NCA transfer methods for biological solid-state NMR spectroscopy. Journal of Magnetic Resonance, 214, 81-90. https://doi.org/10.1016/j.jmr.2011.10.012

Laustsen, C., Østergaard, J., Lauritzen, M. H., Nørregaard, R., Ringgaard, S., Søgaard, L. V-C., Bowen, S., Nielsen, N. C., Flyvbjerg, A., Pedersen, M. & Ardenkjær-Larsen, J. H. (2012). Assessment of diabetic nephropathy with Hyperpolarized [1-13C]Pyruvate. In ISMRM

Nielsen, J. T., Eghbalnia, H. R. & Nielsen, N. C. (2012). Chemical shift prediction for protein structure calculation and quality assessment using an optimally parameterized force field. Progress in Nuclear Magnetic Resonance Spectroscopy, 60, 1-28. https://doi.org/10.1016/j.pnmrs.2011.05.002

Slotsbo, S., Hansen, L. M., Jordaens, K., Backeljau, T., Malmendal, A., Nielsen, N. C. & Holmstrup, M. (2012). Cold tolerance and freeze-induced glucose accumulation in three terrestrial slugs. Comparative Biochemistry and Physiology - Part A: Molecular & Integrative Physiology, 161(4), 443-449. https://doi.org/10.1016/j.cbpa.2012.01.002

Bretschneider, C., Karabanov, A., Nielsen, N. C. & Köckenberger, W. (2012). Conversion of parahydrogen induced longitudinal two-spin order to evenly distributed single spin polarisation by optimal control pulse sequences. Journal of Chemical Physics, 136(9), 094201. https://doi.org/10.1063/1.3691193

Hjørringgaard, C. U., Vad, B. S., Matchkov, V., Nielsen, S. B., Vosegaard, T., Nielsen, N. C., Otzen, D. & Skrydstrup, T. (2012). Cyclodextrin-Scaffolded Alamethicin with Remarkably Efficient Membrane Permeabilizing Properties and Membrane Current Conductance. Journal of Physical Chemistry Part B: Condensed Matter, Materials, Surfaces, Interfaces & Biophysical, 116(26), 7652-7659. https://doi.org/10.1021/jp2098679

Nielsen, N. C., Straasø, L. A. & Nielsen, A. B. (2012). Dipolar Recoupling. Topics in Current Chemistry, 306, 1-45.

Jain, S. K., Bjerring, M. & Nielsen, N. C. (2012). Efficient and Robust Heteronuclear Cross-Polarization for High-Speed-Spinning Biological Solid-State NMR Spectroscopy. The Journal of Physical Chemistry Letters, 3, 703-708.

Vinding, M. S., Maximov, I., Tosner, Z. & Nielsen, N. C. (2012). Fast Numerical Design of Spatial-Selective RF Pulses in MRI using Krotov and Quasi-Newton Based Optimal Control Methods. Journal of Chemical Physics, 137.

Vinding, M. S., Maximov, I., Tosner, Z. & Nielsen, N. C. (2012). Fast Optimal Control in MRI. Poster session presented at QUAINT, Southampton, United Kingdom.

Kristensen, T. N., Overgaard, J., Hoffmann, A. A., Nielsen, N. C. & Malmendal, A. (2012). Inconsistent effects of developmental temperatureacclimation on low-temperature performance andmetabolism in Drosophila melanogaster. Evolutionary Ecology Research, 14, 821-837. http://www.evolutionary-ecology.com/

Kulminskaya, N., Pedersen, M. Ø., Bjerring, M., Underhaug, J., Miller, M., Frigaard, N-U., Nielsen, J. T. & Nielsen, N. C. (2012). In situ solid-state NMR of protein complexes in heterogeneous biological membranes: The baseplate antenna-complex of Chlorobaculum tepidum. Angewandte Chemie International Edition, 51(28), 6891-6895. https://doi.org/10.1002/anie.201201160

Burhardt, M., Taaning, R. H., Nielsen, N. C. & Skrydstrup, T. (2012). Isotope-Labeling of the Fibril Binding Compound FSB via a Pd-Catalyzed Double Alkoxycarbonylation. Journal of Organic Chemistry, 77(12), 5357-5363. https://doi.org/10.1021/jo300746x

Calcutta, A., Jessen, C. M., Behrens, M. A., Oliveira, C. L. P., Renart, M. L., González-Ros, J. M., Otzen, D., Pedersen, J. S., Malmendal, A. & Nielsen, N. C. (2012). Mapping of unfolding states of integral helical membrane proteins by GPS-NMR and scattering techniques: TFE-induced unfolding of KcsA in DDM surfactant. B B A - Biomembranes, 1818(9), 2290-301. https://doi.org/10.1016/j.bbamem.2012.04.005

Bertelsen, K., Dorosz, J., Hansen, S. K., Nielsen, N. C. & Vosegaard, T. (2012). Mechanisms of Peptide-Induced Pore Formation in Lipid Bilayers Investigated by Oriented 31P Solid-State NMR Spectroscopy. P L o S One, 7(10). https://doi.org/10.1371/journal.pone.0047745

Andreasen, M., Nielsen, S. B., Mittag, T., Bjerring, M., Nielsen, J. T., Zhang, S., Nielsen, E. H., Jeppesen, M., Christiansen, G., Besenbacher, F., Dong, M., Nielsen, N. C., Skrydstrup, T. & Otzen, D. E. (2012). Modulation of fibrillation of hIAPP core fragments by chemical modification of the peptide backbone. B B A - Proteins and Proteomics, 1824(2), 274-85. https://doi.org/10.1016/j.bbapap.2011.10.014

Laustsen, C., Bowen, S., Vinding, M. S., Nielsen, N. C. & Ardenkjær-Larsen, J. H. (2012). Optimal Control Singlet State Storage of hyperpolarized compounds. In Optimal Control Singlet State Storage of hyperpolarized compounds

Andreasen, M., Nielsen, S. B., Runager, K., Christiansen, G., Nielsen, N. C., Enghild, J. J. & Otzen, D. (2012). Polymorphic Fibrillation of the Destabilized Fourth Fasciclin-1 Domain Mutant A₅₄6T of the Transforming Growth Factor-β-induced Protein (TGFBIp) Occurs through Multiple Pathways with Different Oligomeric Intermediates. Journal of Biological Chemistry, 287(41), 34730-34742. https://doi.org/10.1074/jbc.M112.379552

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Lise Refstrup Linnebjerg Pedersen