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Interdisciplinary Nanoscience Center

Danish Center for Ultrahigh Field NMR Spectroscopy

Publications

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Nielsen, J. T., Kulminskaya, N., Bjerring, M. & Nielsen, N. C. (2014). Automated robust and accurate assignment of protein resonances for solid state NMR. Journal of Biomolecular N M R, 59(2), 119-134. https://doi.org/10.1007/s10858-014-9835-1

Nielsen, J. T. & Nielsen, N. C. (2014). VirtualSpectrum, a Tool for Simulating Peak List for Multiple-Dimensional NMR Spectra. Journal of Biomolecular N M R, 60(1), 51-66. https://doi.org/10.1007/s10858-014-9851-1

Nielsen, J. T. & Mulder, F. A. A. (2016). There is Diversity in Disorder-"In all Chaos there is a Cosmos, in all Disorder a Secret Order". Frontiers in Molecular Biosciences, 3(FEB), Article 4. https://doi.org/10.3389/fmolb.2016.00004

Nielsen, J. T., Kulminskaya, N. V., Bjerring, M., Linnanto, J. M., Rätsep, M., Pedersen, M. Ø., Lambrev, P. H., Dorogi, M., Garab, G., Thomsen, K., Jegerschöld, C., Frigaard, N. U., Lindahl, M. & Nielsen, N. C. (2016). In situ high-resolution structure of the baseplate antenna complex in Chlorobaculum tepidum. Nature Communications, 7, Article 12454. https://doi.org/10.1038/ncomms12454

Nielsen, N. S., Juhl, D. W., Poulsen, E. T., Lukassen, M. V., Poulsen, E. C., Risør, M. W., Scavenius, C. & Enghild, J. J. (2017). Mutation-Induced Deamidation of Corneal Dystrophy-Related Transforming Growth Factor β-Induced Protein. Biochemistry, 56(49), 6470–6480. https://doi.org/10.1021/acs.biochem.7b00668

Nielsen, J. T. & Mulder, F. A. A. (2018). POTENCI: prediction of temperature, neighbor and pH-corrected chemical shifts for intrinsically disordered proteins. Journal of Biomolecular NMR, 70(3), 141-165. https://doi.org/10.1007/s10858-018-0166-5

Nielsen, J. T. & Mulder, F. A. A. (2019). Quality and bias of protein disorder predictors. Scientific Reports, 9, Article 5137. https://doi.org/10.1038/s41598-019-41644-w

Nielsen, A. B., Hansen, M. R., Andersen, J. E. & Vosegaard, T. (2019). Single-Spin Vector Analysis of Strongly Coupled Nuclei in TOCSY NMR Experiments. Journal of Chemical Physics, 151(13), Article 134117. https://doi.org/10.1063/1.5123046

Nielsen, S. D., Paegle, I., Borisov, S. M., Kjeldsen, K. U., Røy, H., Skibsted, J. & Koren, K. (2019). Optical sensing of ph and o₂ in the evaluation of bioactive self-healing cement. ACS Omega, 4(23), 20237-20243. https://doi.org/10.1021/acsomega.9b02541

Nielsen, J. T. & Mulder, F. A. A. (2020). Quantitative Protein Disorder Assessment Using NMR Chemical Shifts. In B. B. Kragelund & K. Skriver (Eds.), Intrinsically Disordered Proteins (pp. 303-317). Humana Press. https://doi.org/10.1007/978-1-0716-0524-0_15

Nielsen, J. T. & Mulder, F. A. A. (2021). CheSPI: chemical shift secondary structure population inference. Journal of Biomolecular NMR, 75(6-7), 273-291. https://doi.org/10.1007/s10858-021-00374-w

Nielsen, I. G., Sommer, S., Dippel, A. C., Skibsted, J. & Iversen, B. B. (2021). Pair distribution function and⁷¹Ga NMR study of aqueous Ga³⁺complexes. Chemical Science, 12(43), 14420-14431. https://doi.org/10.1039/d1sc05190c

Niedzialek, D., Lemaur, V., Dudenko, D., Shu, J., Hansen, M. R., Andreasen, J. W., Pisula, W., Müllen, K., Cornil, J. & Beljonne, D. (2013). Probing the Relation Between Charge Transport and Supramolecular Organization Down to the Angström Resolution in a Benzothiadiazolecyclopentadithiophene Copolymer. Advanced Materials, 25(13), 1939-1947. https://doi.org/10.1002/adma.201201058

Nied, D., Enemark-Rasmussen, K., L'Hopital, E., Skibsted, J. & Lothenbach, B. (2016). Properties of magnesium silicate hydrates (M-S-H). Cement and Concrete Research, 79, 323-332. https://doi.org/10.1016/j.cemconres.2015.10.003

Nie, S., Thomsen, R. M. & Skibsted, J. (2020). Impact of Mg substitution on the structure and pozzolanic reactivity of calcium aluminosilicate (CaO-Al₂O₃-SiO₂) glasses. Cement and Concrete Research, 138, Article 106231. https://doi.org/10.1016/j.cemconres.2020.106231

Nie, S. & Skibsted, J. (2022). Characterization of Monochromate and Hemichromate AFm Phases and Chromate-Containing Ettringite by¹H,²⁷Al, and⁵³Cr MAS NMR Spectroscopy. Minerals, 12(3), Article 371. https://doi.org/10.3390/min12030371

Newlands, K. C., Foss, M., Matchei, T., Skibsted, J. & Macphee, D. E. (2017). Early stage dissolution characteristics of aluminosilicate glasses with blast furnace slag- and fly-ash-like compositions. Journal of the American Ceramic Society, 100(5), 1941-1955. https://doi.org/10.1111/jace.14716

Nesgaard, L. W., Hoffmann, S. V., Andersen, C. B., Malmendal, A. & Otzen, D. (2008). Characterization of Dry Globular Proteins and Protein Fibrils by Synchrotron Radiation Vacuum UV Circular Dichroism. Biopolymers, 89(9), 779-795.

Narita, A., Feng, X., Hernandez, Y., Jensen, S. A., Bonn, M., Yang, H., Verzhbitskiy, I. A., Casiraghi, C., Hansen, M. R., Koch, A. H. R., Fytas, G., Ivasenko, O., Li, B., Mali, K. S., Balandina, T., Mahesh, S., De Feyter, S. & Müllen, K. (2014). Synthesis of Structurally Well-Defined and Liquid-Phase-Processable Graphene Nanoribbons. Nature Chemistry, 6(2), 126-32. https://doi.org/10.1038/nchem.1819

Narita, A., Verzhbitskiy, I. A., Frederickx, W., Mali, K. S., Jensen, S. A., Hansen, M. R., Bonn, M., De Feyter, S., Casiraghi, C., Feng, X. & Müllen, K. (2014). Bottom-Up Synthesis of Liquid-Phase-Processable Graphene Nanoribbons with Near-Infrared Absorption. ACS Nano, 8(11), 11622-11630. https://doi.org/10.1021/nn5049014

Nagaraj, M., Ahmed, M., Lyngsø, J., Vad, B. S., Bøggild, A., Fillipsen, A., Pedersen, J. S., Otzen, D. E. & Akbey, Ü. (2020). Predicted Loop Regions Promote Aggregation: A Study of Amyloidogenic Domains in the Functional Amyloid FapC. Journal of Molecular Biology, 432(7), 2232-2252. Advance online publication. https://doi.org/10.1016/j.jmb.2020.01.044

Muschiol, S., Erlendsson, S., Aschtgen, M-S., Oliveira, V., Schmieder, P., de Lichtenberg, C., Teilum, K., Boesen, T., Akbey, U. & Henriques-Normark, B. (2017). Structure of the competence pilus major pilin ComGC in Streptococcus pneumoniae. Journal of Biological Chemistry, 292(34), 14134-14146. https://doi.org/10.1074/jbc.M117.787671

Muller, A. C. A., Scrivener, K. L., Skibsted, J., Gajewicz, A. M. & McDonald, P. J. (2015). Influence of silica fume on the microstructure of cement pastes: New insights from H-1 NMR relaxometry. Cement and Concrete Research, 74, 116-125. https://doi.org/10.1016/j.cemconres.2015.04.005

Mulder, F. A. A., Otten, R. & Scheek, R. M. (2011). Origin and removal of mixed-phase artifacts in gradient sensitivity enhanced heteronuclear single quantum correlation spectra. Journal of Biomolecular N M R, 51(1-2), 199-207. https://doi.org/10.1007/s10858-011-9554-9

Mulder, F. A. A. & Scheek, R. M. (2012). Multidimensional NMR spectroscopy. In G. C. K. Roberts (Ed.), Encyclopedia of Biophysics Springer.

Mulder, F. A. A. & Filatov, M. (2010). NMR chemical shift data and ab initio shielding calculations: Emerging tools for protein structure determination. Chemical Society Reviews, 39(2), 578-590. https://doi.org/10.1039/b811366c

Mulder, F. A. A., Bouakaz, L., Lundell, A., Venkataramana, M., Liljas, A., Akke, M. & Sanyal, S. (2004). Conformation and dynamics of ribosomal stalk protein L12 in solution and on the ribosome. Biochemistry, 43(20), 5930-5936. https://doi.org/10.1021/bi0495331

Mulder, F. A. A. & Akke, M. (2003). Carbonyl ¹³C transverse relaxation measurements to sample protein backbone dynamics. Magnetic Resonance in Chemistry, 41(10), 853-865. https://doi.org/10.1002/mrc.1252

Mulder, F. A. A., Hon, B., Mittermaier, A., Dahlquist, F. W. & Kay, L. E. (2002). Slow internal dynamics in proteins: Application of NMR relaxation dispersion spectroscopy to methyl groups in a cavity mutant of T4 lysozyme. Journal of the American Chemical Society, 124(7), 1443-1451. https://doi.org/10.1021/ja0119806

Mulder, F. A., Mittermaier, A., Hon, B., Dahlquist, F. W. & Kay, L. E. (2001). Studying excited states of proteins by NMR spectroscopy. Nature Structural and Molecular Biology, 8(11), 932-935. https://doi.org/10.1038/nsb1101-932

Mulder, F. A. A., Skrynnikov, N. R., Hon, B., Dahlquist, F. W. & Kay, L. E. (2001). Measurement of slow (μs-ms) time scale dynamics in protein side chains by ¹⁵N relaxation dispersion NMR spectroscopy: Application to Asn and Gln residues in a cavity mutant of T4 lysozyme. Journal of the American Chemical Society, 123(5), 967-975. https://doi.org/10.1021/ja003447g

Mulder, F. A. A., Hon, B., Muhandiram, D. R., Dahlquist, F. W. & Kay, L. E. (2000). Flexibility and ligand exchange in a buried cavity mutant of T4 lysozyme studied by multinuclear NMR. Biochemistry, 39(41), 12614-12622. https://doi.org/10.1021/bi001351t

Mulder, F. A., Ayed, A., Yang, D., Arrowsmith, C. H. & Kay, L. E. (2000). Assignment of 1H(N), 15N, 13C(alpha), 13CO and 13C(beta) resonances in a 67 kDa p53 dimer using 4D-TROSY NMR spectroscopy. Journal of Biomolecular N M R, 18(2), 173-176. https://doi.org/10.1023/A:1008317825976

Mulder, F. A. A., Schipper, D., Bott, R. & Boelens, R. (1999). Altered flexibility in the substrate-binding site of related native and engineered high-alkaline Bacillus subtilisins. Journal of Molecular Biology, 292(1), 111-123. https://doi.org/10.1006/jmbi.1999.3034

Mulder, F. A. A., van Tilborg, P. J., Kaptein, R. & Boelens, R. (1999). Microsecond time scale dynamics in the RXR DNA-binding domain from a combination of spin-echo and off-resonance rotating frame relaxation measurements. Journal of Biomolecular N M R, 13(3), 275-288. https://doi.org/10.1023/A:1008354232281

Mulder, F. A. A., Graaf, R. A. D., Kaptein, R. & Boelens, R. (1998). An Off-resonance Rotating Frame Relaxation Experiment for the Investigation of Macromolecular Dynamics Using Adiabatic Rotations. Journal of Magnetic Resonance, 131(2), 351-357. https://doi.org/10.1006/jmre.1998.1380

Mulder, F. A. A., Spronk, C. A. E. M., Slijper, M., Kaptein, R. & Boelens, R. (1996). Improved HSQC experiments for the observation of exchange broadened signals. Journal of Biomolecular N M R, 8(2), 223-228. https://doi.org/10.1007/BF00211169

Mulder, F. A. A. (2018). Fuzzy and fast nuclear transport. Journal of Biological Chemistry, 293(12), 4564-4565. https://doi.org/10.1074/jbc.H118.002129

Mulder, F. A. A., Tenori, L. & Luchinat, C. (2019). Fast and Quantitative NMR Metabolite Analysis Afforded by a Paramagnetic Co-Solute. Angewandte Chemie - International Edition, 58(43), 15283-15286. https://doi.org/10.1002/anie.201908006

Mulder, F. A. A. (2021). NMR spectroscopy charges into protein surface electrostatics. Proceedings of the National Academy of Sciences, 118(30), Article 2110176118. https://doi.org/10.1073/pnas.2110176118

Mosegaard, L., Møller, B., Jørgensen, J-E., Bösenberg, U., Dornheim, M., Hanson, J. C., Cerenius, Y., Walker, G., Jakobsen, H. J., Besenbacher, F. & Jensen, T. R. (2007). Intermediate phases observed during decomposition of LiBh₄. Journal of Alloys and Compounds, 446-447, 301-305.

Mosegaard, L., Bomholdt Ravnsbæk, D., Jørgensen, J-E., Jakobsen, H. J., Cerenius, Y., Besenbacher, F. & Jensen, T. R. (2008). Substitution in LiBH₄ by solid state diffusion - Structural and physical properties of LiX_x(BH₄)_1-x(X = F, Cl and Br). Poster session presented at MH2008, Reykjavik, Iceland.

Mosegaard, L., Bomholdt Ravnsbæk, D., Jørgensen, J-E., Jakobsen, H. J., Cerenius, Y., Besenbacher, F. & Jensen, T. R. (2009). Substitution in LiBH₄ by solid state diffusion - Structural and physical properties of LiX_x(BH₄)_1-x(X = F, Cl and Br). Poster session presented at Beyond Kyoto, Århus, Denmark.

Mortensen, H. G., Madsen, J. K., Andersen, K. K., Vosegaard, T., Deen, G. R., Otzen, D. E. & Pedersen, J. S. (2017). Myoglobin and α-Lactalbumin Form Smaller Complexes with the Biosurfactant Rhamnolipid Than with SDS. Biophysical Journal, 113(12), 2621-2633. https://doi.org/10.1016/j.bpj.2017.10.024

Mortensen, H. G., Jensen, G. V., Hansen, S. K., Vosegaard, T. & Pedersen, J. S. (2018). Structure of phospholipid mixed micelles (Bicelles) studied by small-angle X-ray scattering. Langmuir, 34(48), 14597-14607. https://doi.org/10.1021/acs.langmuir.8b02704

Møller, K. T., Fogh, A., Paskevicius, M., Skibsted, J. & Jensen, T. R. (2016). Metal borohydride formation from aluminium boride and metal hydrides. Physical Chemistry Chemical Physics, 18(39), 27545-27553. https://doi.org/10.1039/C6CP05391B

Møller, K. T., Jørgensen, M., Andreasen, J. G., Skibsted, J., Łodziana, Z., Filinchuk, Y. & Jensen, T. R. (2017). Potassium Tetraamidoboranealuminate, K[Al(NH2BH3)4]: Synthesis, Characterization and Thermal Decomposition.. Poster session presented at Hydrogen-Metal Systems Gordon Research Conference 2017, Eastern, Massachusetts, United States.

Møller, K. T., Andreasen, J. G., Jørgensen, M., Skibsted, J., Łodziana, Z., Filinchuk, Y. & Jensen, T. R. (2017). A Potassium and Aluminium based Amidoborane. Poster session presented at iNano Annual Meeting 2017, Aarhus, Denmark.

Møller, K. T., Jørgensen, M., Andreasen, J. G., Skibsted, J., Łodziana, Z., Filinchuk, Y. & Jensen, T. R. (2018). Synthesis and thermal decomposition of potassium tetraamidoboranealuminate, K[Al(NH₂BH₃)₄]. International Journal of Hydrogen Energy, 43(1), 311-321. https://doi.org/10.1016/j.ijhydene.2017.11.080

Møller, K. V., Nguyen, H. T. T., Mørch, M. G. M., Hesselager, M. O., Mulder, F. A. A., Fuursted, K. & Olsen, A. (2022). A Lactobacilli diet that confers MRSA resistance causes amino acid depletion and increased antioxidant levels in the C. elegans host. Frontiers in Microbiology, 13, Article 886206. https://doi.org/10.3389/fmicb.2022.886206

Displaying results 351 to 400 out of 867

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Lise Refstrup Linnebjerg Pedersen