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Interdisciplinary Nanoscience Center

Danish Center for Ultrahigh Field NMR Spectroscopy

Publications

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Underhaug, J., Koldsø, H., Runager, K., Nielsen, J. T., Sørensen, C. S., Kristensen, T., Otzen, D., Karring, H., Malmendal, A., Schiøtt, B., Enghild, J. J. & Nielsen, N. C. (2013). Mutation in transforming growth factor beta induced protein associated with granular corneal dystrophy type 1 reduces the proteolytic susceptibility through local structural stabilization. BBA General Subjects, 1834(12), 2812–2822. https://doi.org/10.1016/j.bbapap.2013.10.008

Tosner, Z., Glaser, S. J., Khaneja, N. & Nielsen, N. C. (2006). Effective hamiltonians by optimal control: solid-state NMR double-quantum and isotropic dipolar recoupling. Journal of Chemical Physics, 125, 184502-1 - 184502-10.

Tosner, Z., Vosegaard, T., Kehlet, C., Khaneja, N., Glaser, S. & Nielsen, N. C. (2009). Optimal control in NMR spectroscopy: Numerical implementation in SIMPSON. Journal of Magnetic Resonance, 197, 120-134. https://doi.org/10.1016/j.jmr.2008.11.020

Tosner, Z., Andersen, R., Stevensson, B., Edén, M., Nielsen, N. C. & Vosegaard, T. (2014). Computer-intensive simulation of solid-state NMR experiments using SIMPSON. Journal of Magnetic Resonance, 246, 79-93. https://doi.org/10.1016/j.jmr.2014.07.002

Tosner, Z., Nielsen, N. C. & Vinding, M. S. (2017). Computational design of NMR pulse sequences. In J. C. Lindon, G. E. Tranter & D. W. Koppenaal (Eds.), Encyclopedia of Spectroscopy and Spectrometry: Encyclopedia of Spectroscopy and Spectrometry (Third Edition) (3rd ed., pp. 341–349). Elsevier. https://doi.org/10.1016/B978-0-12-409547-2.12105-5

Thøgersen, L., Schiøtt, B., Vosegaard, T., Nielsen, N. C. & Tajkhorshid, E. (2008). Peptide Aggregation and Pore Formation in a Lipid Bilayer: A Combined Coarse-Grained and All Atom Molecular Dynamics Study. Biophysical Journal, 95(9), 4337-4347. https://doi.org/10.1529/biophysj.108.133330

Thøgersen, H., Nielsen, N. C. & Sørensen, O. W. (1996). A systematic strategy for design of optimum coherent experiments applied to efficient interconversion of double- and single-quantum coherencesin nuclear magnetic resonance. Journal of Chemical Physics, 105, 3962-3968.

Svane, A. S. P., Jahn, K., Deva, T., Malmendal, A., Otzen, D., Dittmer, J. & Nielsen, N. C. (2008). Early Stages of Amyloid Fibril Formation Studied by Liquid-State NMR: The Peptide Hormone Glucagon. Biophysical Journal, 95(1), 366 – 377. https://doi.org/10.1529/biophysj.107.122895

Svane, A. S. P., Sørensen, J., Schiøtt, H. B. & Nielsen, N. C. (2009). Glucagon - A model for amyloid fibril formation. Poster session presented at 7th Annual iNano Symposium, Århus, Denmark.

Svane, A. S. P., Jahn, K., Malmendal, A., Dittmer, J. & Nielsen, N. C. (2009). Studying the Kenitics of Amyloid Formation using Liquid-State NMR: Early Stages of Glucagon Fibril Formation. Poster session presented at 50th Experimental NMR conference (ENC), Asilomar, CA, United States.

Straasø, L. A., Bjerring, M., Khaneja, N. & Nielsen, N. C. (2009). Multiple-oscillating-field techniques for accurate distance measurements by solid-state NMR. Journal of Chemical Physics, 130, 225103-1-225103-14. https://doi.org/10.1063/1.3147010

Straasø, L. A., Bjerring, M., Khaneja, N. & Nielsen, N. C. (2009). Four-Oscillating-Fiels Technique for Accurate Distance Measurement by Solid-State NMR. Poster session presented at 50th Experimental NMR Conference (ENC), Asilomar, CA, United States.

Straasø, L. A. & Nielsen, N. C. (2010). Recoupling of native homonuclear dipolar couplings in magic-angle-spinning solid-state NMR by the double-oscillating field technique. Journal of Chemical Physics, 133, 064501.

Straasø, L. A., Nielsen, J. T., Bjerring, M., Khaneja, N. & Nielsen, N. C. (2014). Accurate measurements of ¹³C-¹³C distances in uniformly ¹³C-labeled proteins using multi-dimensional four-oscillating field solid-state NMR spectroscopy. Journal of Chemical Physics, 141(11), Article 114201. https://doi.org/10.1063/1.4895527

Straasø, L. A., Shankar, R., Tan, K. O., Hellwagner, J., Meier, B. H., Hansen, M. R., Nielsen, N. C., Vosegaard, T., Ernst, M. & Nielsen, A. B. (2016). Improved transfer efficiencies in radio-frequency-driven recoupling solid-state NMR by adiabatic sweep through the dipolar recoupling condition. The Journal of Chemical Physics, 145(3), Article 034201. https://doi.org/10.1063/1.4958318

Sørensen, M. K., Bakharev, O., Jensen, O., Jakobsen, H. J., Skibsted, J. & Nielsen, N. C. (2014). Magic-angle spinning solid-state multinuclear NMR on low-field instrumentation. Journal of Magnetic Resonance, 238, 20-25. https://doi.org/10.1016/j.jmr.2013.10.015

Sørensen, M. K., Vinding, M. S., Bakharev, O. N., Nesgaard, T., Jensen, O. & Nielsen, N. C. (2014). NMR Sensor for Onboard Ship Detection of Catalytic Fines in Marine Fuel Oil. Analytical Chemistry, 86(15), 7205-7208. https://doi.org/10.1021/ac5014496

Sørensen, M. K., Jensen, O., Bakharev, O. N., Nyord, T. & Nielsen, N. C. (2015). NPK NMR Sensor: Online Monitoring of Nitrogen, Phosphorus, and Potassium in Animal Slurry. Analytical Chemistry, 87(13), 6446-6450. https://doi.org/10.1021/acs.analchem.5b01924

Sørensen, M. K., Bakharev, O. N., Jensen, O. & Nielsen, N. C. (2016). Natural abundant O-17 NMR in a 1.5-T Halbach magnet. Magnetic Resonance in Chemistry, 54(6), 510-512. https://doi.org/10.1002/mrc.4207

Sørensen, M. K., M. Balsgart, N., Jensen, O., Nielsen, N. C. & Vosegaard, T. (2018). Fast Wide‐Line Solid‐State NMR on a Low‐Cost Benchtop Spectrometer. ChemPhysChem, 19(22), 2985-2988. https://doi.org/10.1002/cphc.201800711

Sørensen, M. K., Balsgart, N. M., Beyer, M., Jensen, O. N. & Nielsen, N. C. (2022). On-Site Measurement of Fat and Protein Contents in Milk Using Mobile NMR Technology. Molecules, 27(3), Article 583. https://doi.org/10.3390/molecules27030583

Slotsbo, S., Maraldo, K., Malmendal, A., Nielsen, N. C. & Holmstrup, M. (2008). Freeze tolerance and accumulation of cryoprotectants in the enchytraeid Enchytraeus albidus (Oligochaeta) from Greenland and Europe. Cryobiology, 57, 286-291.

Slotsbo, S., Maraldo, K., Malmendal, A., Nielsen, N. C. & Holmstrup, M. (2008). Freeze tolerance and accululation of cryoprotectants in the enchytraeid Enchytraeus albidus. Poster session presented at The annual main meeting of the Society for Experimental Biology - SEB, Marseille, France.

Slotsbo, S., Hansen, L. M., Jordaens, K., Backeljau, T., Malmendal, A., Nielsen, N. C. & Holmstrup, M. (2012). Cold tolerance and freeze-induced glucose accumulation in three terrestrial slugs. Comparative Biochemistry and Physiology - Part A: Molecular & Integrative Physiology, 161(4), 443-449. https://doi.org/10.1016/j.cbpa.2012.01.002

Sivertsen, A. C., Bjerring, M., Kehlet, C. T., Vosegaard, T. & Nielsen, N. C. (2005). Numerical Simulations in Biological Solid-State NMR Spectroscopy. Ann. R. NMR. S., 54, 243-293.

Sivertsen, A. C., Gasior, M., Bjerring, M., Hansen, S. U., Lopez, O. L., Nielsen, N. C. & Bols, M. (2007). Active Site Protonation of 1-Azafagomine in Glucosidases Studied by Solid-State NMR Spectroscopy. European Journal of Organic Chemistry, 1735-1742. https://doi.org/10.1002/ejoc.200600816

Singh, G., Phalgune, U. D., Madhu, P. K., Nielsen, N. C. & Ganapathy, S. (2022). Chemical shielding and electric field gradient tensors of disodium 5′-adenosine triphosphate trihydrate determined by solid-state NMR spectroscopy and ab initio calculations. Journal of Magnetic Resonance, 10-11, Article 100051. https://doi.org/10.1016/j.jmro.2022.100051

Siminovitch, D., Untidt, T. S. & Nielsen, N. C. (2004). Exact effective Hamiltonian theory. II: Expansion of matrix functions and entangled unitary exponential operators. Journal of Chemical Physics, 120, 51-66.

Sharma, K., Equbal, A., Nielsen, N. C. & Madhu, P. K. (2019). A unified heteronuclear decoupling picture in solid-state NMR under low radio-frequency amplitude and fast magic-angle-spinning frequency regime. Journal of Chemical Physics, 150(14), Article 144201. https://doi.org/10.1063/1.5082352

Shankar, R., Ernst, M., Madhu, P. K., Vosegaard, T., Nielsen, N. C. & Nielsen, A. B. (2017). A general theoretical description of the influence of isotropic chemical shift in dipolar recoupling experiments for solid-state NMR. Journal of Chemical Physics, 146(13), Article 134105. https://doi.org/10.1063/1.4979123

Schulte-Herbrüggen, T., Untidt, T. S., Nielsen, N. C. & Sørensen, O. W. (2001). Broadband composite spin-state-selective rotations for NMR spectroscopy on partially aligned molecules. Journal of Chemical Physics, 115, 8506-8517.

Sattler, M., Schleucher, J., Schedledtzky, O., Glaser, S. J., Griesinger, C., Nielsen, N. C. & Sørensen, O. W. (1996). α&β HSQC, an HSQC-Type Experiment with Improved Resolution for I₂S Groups. Journal of Magnetic Resonance, 119(2), 171-179.

Sarup, P. M., Pedersen, S. M., Nielsen, N. C., Malmendal, A. & Loeschcke, V. (2012). The metabolic profile of long-lived Drosophila melanogaster. P L o S One, 7(10), e47461. https://doi.org/10.1371/journal.pone.0047461

Sarup, P., Petersen, S. M. M., Nielsen, N. C., Loeschcke, V. & Malmendal, A. (2016). Mild heat treatments induce long-term changes in metabolites associated with energy metabolism in Drosophila melanogaster. Biogerontology, 17(5), 873-882. Article 873. https://doi.org/10.1007/s10522-016-9657-5

Sanggaard, K. W., Danielsen, C. C., Wogensen, L., Vinding, M. S., Rydtoft, L. M., Mortensen, M. B., Karring, H., Nielsen, N. C., Wang, T., Thøgersen, I. B. & Enghild, J. J. (2012). Unique structural features facilitate lizard tail autotomy. P L o S One, 7(12), e51803. https://doi.org/10.1371/journal.pone.0051803

Runager, K., Underhaug, J., Basaiawmoit, R. V., Valnickova, Z., Kristensen, T., Otzen, D., Klintworth, G. K., Nielsen, N. C. & Enghild, J. J. (2009). Naturally Occurring Mutations Alter the Structure and Stability of the Fourth Fasciclin Domain of the Transforming Growth Factor Beta Induced Protein (TGFBIp). Investigative Ophthalmology & Visual Science, (E-Abstract 1016).

Runager, K., Garcia-Castellanos, R., Valnickova, Z., Kristensen, T., Nielsen, N. C., Klintworth, G. K., Gomis-Ruth, F. X. & Enghild, J. J. (2009). Purification, crystallization and preliminary X-raydiffraction of wild-type and mutant recombinanthuman transforming growth factor b-inducedprotein (TGFBIp). Acta Crystallographica. Section F: Structural Biology and Crystallization Communications Online, 65, 299-303.

Runager, K., Basaiawmoit, R. V., Deva, T., Andreasen, M., Valnickova, Z., Sørensen, C. S., Karring, H., Thøgersen, I. B., Christiansen, G., Underhaug, J., Kristensen, T., Nielsen, N. C., Klintworth, G. K., Otzen, D. E. & Enghild, J. J. (2011). Human Phenotypically Distinct TGFBI Corneal Dystrophies Are Linked to the Stability of the Fourth FAS1 Domain of TGFBIp. Journal of Biological Chemistry, 286(7), 4951-8. https://doi.org/10.1074/jbc.M110.181099

Roodbeen, R., Paaske, B., Jiang, L., Jensen, J. K., Christensen, A., Nielsen, J. T., Huang, M., Mulder, F. A. A., Nielsen, N. C., Andreasen, P. & Jensen, K. J. (2013). Bicyclic Peptide Inhibitor of Urokinase-Type Plasminogen Activator: Mode of Action. ChemBioChem, 14(16), 2179–2188. https://doi.org/10.1002/cbic.201300335

Risør, M. W., Poulsen, E. T., Thomsen, L. R., Dyrlund, T. F., Nielsen, T. A., Nielsen, N. C., Sanggaard, K. W. & Enghild, J. J. (2014). The autolysis of human HtrA1 is governed by the redox state of its N-terminal domain. Biochemistry, 53(23), 3851-3857. https://doi.org/10.1021/bi401633w

Risør, M. W., Juhl, D. W., Bjerring, M., Mathiesen, J., Enghild, J. J., Nielsen, N. C. & Otzen, D. E. (2017). Critical Influence of Cosolutes and Surfaces on the Assembly of Serpin-Derived Amyloid Fibrils. Biophysical Journal, 113(3), 580-596. https://doi.org/10.1016/j.bpj.2017.06.030

Rasmussen, J. T., Hohwy, M., Jakobsen, H. J. & Nielsen, N. C. (1999). Magnitude; absolute orientation of ¹H chemical shielding tensors in polycrystalline powders. A ¹H CRAMPS NMR study of KH₂PO₄. Chemical Physics Letters, 314, 239-245.

Rasmussen, L. K., Johnsen, L. B., Tsiora, A., Sørensen, E. S., Thomsen, J. K., Nielsen, N. C., Jakobsen, H. J. & Petersen, T. E. (1999). Disulphide-linked caseins and casein micelles. International Dairy Journal, 9, 215-218.

Rasmussen, L. K., Sørensen, E., Petersen, T. E., Nielsen, N. C. & Thomsen, J. K. (1997). Characterization of Phosphate Sites in Native Ovine, Caprine, and Bovine Casein Micelles and Their Caseinomacropeptides: A Solid-State Phosphorus-31 Nuclear Magnetic Resonance and Sequence and Mass Spectrometric Study. Journal of Dairy Science, 80, 607-614.

Petersen, S. V., Valnickova, Z., Oury, T. D., Crapo, J. D., Nielsen, N. C. & Enghild, J. J. (2007). The Subunit Composition of Human Extracellylar Superoxide Dismutate (EC-SOD) Regulate Enzymatic Activity. B M C Biochemistry, 8, 19.

Petersen, S. V., Kristensen, T., Petersen, J. S., Ramsgaard, L., Oury, T. D., Crapo, J. D., Nielsen, N. C. & Enghild, J. J. (2008). The folding of human aEC-sod and iEC-sod is an intracellular event. Journal of Biological Chemistry.

Petersen, S. V., Thøgersen, I., Valnickova, Z., Nielsen, M. S., Petersen, J. S., Poulsen, E. T., Jacobsen, C., Oury, T. D., Moestrup, S. K., Crapo, J. D., Nielsen, N. C., Kristensen, T. & Enghild, J. J. (2010). The concentration of extracellular superoxide dismutase in plasma is maintained by LRP-mediated endocytosis. Free Radical Biology & Medicine, 49(5), 894-9. https://doi.org/10.1016/j.freeradbiomed.2010.06.019

Petersen, S. V., Kristensen, T., Petersen, J. S., Ramsgaard, L., Oury, T., Crapo, J., Nielsen, N. C. & Enghild, J. J. (2008). The folding of human active and inactive extracellular superoxide dismutase is an intracellular event. Journal of Biological Chemistry, 283(22), 15031. https://doi.org/10.1074/jbc.M801548200

Penner, R., Andersen, E. S., Jensen, J. L., Kantcheva, A. K., Bublitz, M., Nissen, P., Rasmussen, A. M. H., Svane, K. L., Hammer, B., Rezazadegan, R., Nielsen, N. C., Nielsen, J. T. & Andersen, J. E. (2014). Hydrogen bond rotations as a uniform structural tool for analyzing protein architecture. Nature Communications, 5, Article 5803. https://doi.org/10.1038/ncomms6803

Pedersen, S. M., Rafter, J., Petterson, S., Samuelsson, A., Svensson, U., Nielsen, N. C., Bertram, H. C. S. & Malmendal, A. (2009). 1H NMR Liquid State Metabonomic Analysis of Probiotic-Host Interaction in an Irritable Bowel Syndrome Mouse Model. Poster session presented at 30th Danish NMR Meeting, København, Denmark.

Displaying results 51 to 100 out of 290

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Revised 17.04.2023

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Lise Refstrup Linnebjerg Pedersen