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Interdisciplinary Nanoscience Center

Danish Center for Ultrahigh Field NMR Spectroscopy

Publications

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Pedersen, M. Ø., Underhaug, J., Dittmer, J., Miller, M. & Nielsen, N. C. (2008). The three-dimensional structure of CsmA: A small antenna protein from the green sulfur bacterium Chlorobium tepidum. F E B S Letters, 582(19), 2869-2874. https://doi.org/10.1016/j.febslet.2008.07.020

Pedersen, K. S., Kristensen, T. N., Loeschcke, V., Pedersen, B. O., Duus, J. Ø., Nielsen, N. C. & Malmendal, A. (2008). Metabolomic Signatures of Inbreeding at Benign and Stressful Temperatures in Drosophila melanogaster. Genetics, 180, 1233-1243. https://doi.org/10.1534/genetics.108.089144

Pedersen, S. M., Svensson, U., Andersen, H. J., Nielsen, N. C., Malmendal, A. & Bertram, H. C. (2008). A nutrigenomic appraoch for the action of probiotic bacteria - A NMR-metabonomic study of biofluids and tissues. Poster session presented at 29th Danish NMR Meeting, Nyborg, Denmark.

Pedersen, S. M., Nielsen, N. C., Andersen, H. J., Olsson, J., Simrén, M., Öhman, L., Svensson, U., Malmendal, A. & Bertram, H. C. (2010). The Serum Metabolite Response to Diet Intervention with Probiotic Acidified Milk in Irritable Bowel Syndrome Patients is indistiguishanble from that of Non-Probiotic Acidified Milk by 1H NMR-based Metabonomic Analysis. Nutrients, 2, 1141-1155.

Pedersen, S. M., Samuelsson, A., Svensson, U., Rafter, J., Petterson, S., Nielsen, N. C., Bertram, H. C. & Malmendal, A. (2011). Metabonomic Effects of Strain and Delivering Method in Probiotic Fed Mice Induced with Mild Colitis. World Journal of Gastroenterology.

Pedersen, M. Ø., Linnanto, J., Frigaard, N-U., Nielsen, N. C. & Miller, M. (2010). A model of the protein-pigment baseplate complex in chlorosomes of photosynthetic green bacteria. Photosynthesis Research, 104(2-3), 233-243. https://doi.org/10.1007/s11120-009-9519-y

Pedersen, S. M., Nebel, C., Nielsen, N. C., Andersen, H. J., Olsson, J., Simrén, M., Öhman, L., Svensson, U., Bertram, H. C. S. & Malmendal, A. (2011). A GC-MS-based metabonomic investigation of blood serum from irritable bowel syndrome patients undergoing intervention with acidified milk products. European Food Research and Technology, 233(6), 1013-1021. https://doi.org/10.1007/s00217-011-1599-1

Pedersen, M. Ø., Mikkelsen, K., Behrens, M. A., Pedersen, J. S., Enghild, J. J., Skrydstrup, T., Malmendal, A. & Nielsen, N. C. (2010). NMR reveals two-step association of Congo Red to amyloid β in low-molecular-weight aggregates. Journal of Physical Chemistry Part B: Condensed Matter, Materials, Surfaces, Interfaces & Biophysical, 114(48), 16003-16010. https://doi.org/10.1021/jp108035y

Overgaard, J., Malmendal, A., Sørensen, J. G., Bundy, J. G., Loeschcke, V., Nielsen, N. C. & Holmstrup, M. (2007). Metabolomic profiling of rapid cold hardening and cold shock in Drosophila melanogaster. Journal of Insect Physiology, 53(12), 1218-1232. http://dx.doi.org/10.1016/j.jinsphys.2007.06.012

Oktaviani, N. A., Risør, M. W., Lee, Y-H., Megens, R. P., de Jong, D. H., Otten, R., Scheek, R. M., Enghild, J. J., Nielsen, N. C., Ikegami, T. & Mulder, F. A. A. (2015). Optimized co-solute paramagnetic relaxation enhancement for the rapid NMR analysis of a highly fibrillogenic peptide. Journal of Biomolecular N M R, 62(2), 129-142. https://doi.org/10.1007/s10858-015-9925-8

Odgaard, L., Bak, M., Jakobsen, H. J. & Nielsen, N. C. (2001). 13C Chemical Shift and 13C-14N Dipolar Coupling Tensors Determined by 13C Rotary Resonance Solid-State NMR. Journal of Magnetic Resonance, 148, 298-308.

Odgaard, L., Bak, M., Jakobsen, H. J. & Nielsen, N. C. (2001). ¹³C chemical shift and ¹³C-¹⁴N dipolar coupling tensors determined by ¹³C rotary resonance NMR. Journal of Magnetic Resonance, 148, 298-308.

Nielsen, N. C., Malmendal, A. & Vosegaard, T. (2004). Techniques and Applications of NMR to Membrane Proteins. Mol. Membr. Biol., 21, 129-141.

Nielsen, G., Malmendal, A., Meissner, A., Møller, J. V. & Nielsen, N. C. (2003). NMR studies of the fifth transmembrane segment of sarcoplasmic reticulum Ca₂+-ATPase reveals a hinge close to the Ca₂+ ligating residues. F E B S Letters, 544, 50-56.

Nielsen, N. C. (2005). Computational Aspects of Biological Solid-State NMR Spectroscopy. In NMR Spectroscopy of Biological Solids (pp. Chapter 11). Taylor and Francis.

Nielsen, N. C., Vosegaard, T. & Malmendal, A. (2006). Analytical and Numerical Tools for Experiment Design in Solid-State NMR Spectroscopy. In Handbook of Modern Magnetic Resonance

Nielsen, N. C., Malmendal, A., Vestergaard, M., Oksbjerg, N., Young, J. F., Bertram, H. C., Theil, P. K., Petersen, A-G. D., Poulsen, K. A. & Rasmussen, M. (2007). In vito and in vivo studies of cretine monohydrate supplementation to Duroc and Landrace pigs. Meat Science, 76, 342-51.

Nielsen, N. C., Malmendal, A., Bertram, H. C., Petersen, B. O., Madsen, J. C., Pedersen, H., Hoppe, C., Mølgaard, C., Michaelsen, K. F. & Duus, J. Ø. (2007). Effect of magnetic field strength on NMR-based metabonomic of human urine data - A comparative study of 250, 400, 500 and 800 MHz. Bunseki, 79(18), 7110-7115.

Nielsen, N. C., Vosegaard, T., Ishijima, M. K. & Watts, A. (2007). Helix Conformations in 7TM Membrane Protein Determined using Oriented Sample Solid-State NMR. Biophysical Journal, 94, 241-250.

Nielsen, N. C. & Khaneja, N. (2008). Triple Oscillating Field Technique for Accurate Distance Measurements by Solid-State NMR. Journal of Chemical Physics, 128, 015103.

Nielsen, L., Lindsay, K., Faber, J., Nielsen, N. C. & Skrydstrup, T. (2007). Stereocontrolled Synthesis of Methyl Silanediol Peptide Mimics. Journal of Organic Chemistry, 72, 10035-10044.

Nielsen, J. T., Bjerring, M., Jeppesen, M., Pedersen, R. O., Pedersen, J. M., Hein, K. L., Vosegaard, T., Skrydstrup, T., Otzen, D. & Nielsen, N. C. (2009). Unique identification of supramolecular structures in amyloid fibrils by solid-state NMR spectroscopy. Angewandte Chemie International Edition, 48, 2118-2121.

Nielsen, K. M. E., Dittmer, J., Malmendal, A. & Nielsen, N. C. (2008). Quantitative Analysis of Constituents in Heavy Fuel Oil by 1H Nuclear Magnetic Resonance (NMR) Spectroscopy and Multivariate Data Analysis. Energy & Fuels, 22(6), 4070–4076. https://doi.org/10.1021/ef800539g

Nielsen, N. C., Nielsen, J. T. & Tosner, Z. (2008). When proteins aggregate. In The Villum Kann Rasmussen Foundation and Velux Foundation Annual Report 2008

Nielsen, A. B., Bjerring, M., Nielsen, J. T. & Nielsen, N. C. (2009). Symmetry-based dipolar recoupling by optimum control: Band selective experiments for assignment of solid-state NMR spectra of proteins. Journal of Chemical Physics, 131, 025101-1-025101-11. https://doi.org/10.1063/1.3157737

Nielsen, J. T., Bjerring, M., Jeppesen, M., Pedersen, R. O., Pedersen, J. M., Hein, K. L., Vosegaard, T., Skrydstrup, T., Otzen, D. & Nielsen, N. C. (2009). Unique Identification of Supramolecular Structures in Amyloid Fibrils by Solid-State NMR. Poster session presented at 50th Experimental NMR Conference (ENC), Asilomar, CA, United States.

Nielsen, N. C. & Hohwy, M. (1998). Systematic design and evaluation of multiple-pulse experiments in nuclearmagnetic resonance spectroscopy using a semi-continuous Baker-Campbell-Hausdorff expansion. Journal of Chemical Physics, 109, 3780-3791.

Nielsen, N. C. & Sørensen, O. W. (1996). The Tolerance to J Mismatch and the Symmetry Properties of INADEQUATE CR. Journal of Magnetic Resonance, 123, 135-139.

Nielsen, N. C., Thøgersen, H. & Sørensen, O. W. (1995). Doubling the Sensitivity of INADEQUATE for a I3a I3Tracing Out the Carbon Skeleton of Moleculesby NMR. Journal of the American Chemical Society, 117, 11365-11366.

Nielsen, N. C., Christensen, P. D., Langer, V., Thomsen, J. K., Nielsen, S., Sørensen, O. W. & Jakobsen, H. J. (1995). A flat-coil NMR probe with hydration control of oriented phospholipid bilayer samples. Journal of Biomolecular N M R, 5(3), 311-314.

Nielsen, N. C. & Sørensen, O. W. (1995). Conditional Bounds on Polarization Transfer. Journal of Magnetic Resonance, 114, 24-31.

Nielsen, A. B., Straasø, L. A., Nieuwkoop, A. J., Rienstra, C. M., Bjerring, M. & Nielsen, N. C. (2010). Broadband Heteronuclear Solid-State NMR Experiments by Exponentially Modulated Dipolar Recoupling without Decoupling. Journal of physical chemistry letters, 1((13)), 1952-1958.

Nielsen, N. C., Kehlet, C., Glaser, S. J. & Khaneja, N. (2010). Optimal control methods in NMR. In Encyclopedia of Magnetic Resonance John Wiley & Sons Ltd. https://doi.org/10.1002/9780470034590.emrstm1043

Nielsen, A. B., Jain, S. K. & Nielsen, N. C. (2011). Low-power homonuclear dipolar recoupling using supercycled symmetry-based and exponentially-modulated pulse sequences. Chemical Physics Letters, 503, 310-315.

Nielsen, N. C., Straasø, L. A. & Nielsen, A. B. (2012). Dipolar Recoupling. Topics in Current Chemistry, 306, 1-45.

Nielsen, J. T., Eghbalnia, H. R. & Nielsen, N. C. (2012). Chemical shift prediction for protein structure calculation and quality assessment using an optimally parameterized force field. Progress in Nuclear Magnetic Resonance Spectroscopy, 60, 1-28. https://doi.org/10.1016/j.pnmrs.2011.05.002

Nielsen, A. B., Nielsen, N. C., Gath, J., Székely, K., Ernst, M. & Meier, B. H. (2012). Simultaneous acquisition of PAR and PAIN spectra. Journal of Biomolecular N M R, Volume 52(Issue 4), 283-288. https://doi.org/10.1007/s10858-012-9616-7

Nielsen, S. B., Macchi, F., Raccosta, S., Langkilde, A. E., Giehm, L., Kyrsting, A., Svane, A. S. P., Manno, M., Christiansen, G., Nielsen, N. C., Oddershede, L., Vestergaard, B. & Otzen, D. (2013). Wildtype and A30P Mutant Alpha-Synuclein Form Different Fibril Structures. P L o S One, 8(7), [e67713]. https://doi.org/10.1371/journal.pone.0067713

Nielsen, A. B., Jain, S. K., Ernst, M., Meier, B. H. & Nielsen, N. C. (2013). Adiabatic Rotor-Echo-Short-Pulse-Irradiation Mediated Cross-Polarization. Journal of Magnetic Resonance, 237, 147-151. https://doi.org/10.1016/j.jmr.2013.09.002

Nielsen, J. T., Kulminskaya, N., Bjerring, M. & Nielsen, N. C. (2014). Automated robust and accurate assignment of protein resonances for solid state NMR. Journal of Biomolecular N M R, 59(2), 119-134. https://doi.org/10.1007/s10858-014-9835-1

Nielsen, J. T. & Nielsen, N. C. (2014). VirtualSpectrum, a Tool for Simulating Peak List for Multiple-Dimensional NMR Spectra. Journal of Biomolecular N M R, 60(1), 51-66. https://doi.org/10.1007/s10858-014-9851-1

Nielsen, J. T., Kulminskaya, N. V., Bjerring, M., Linnanto, J. M., Rätsep, M., Pedersen, M. Ø., Lambrev, P. H., Dorogi, M., Garab, G., Thomsen, K., Jegerschöld, C., Frigaard, N. U., Lindahl, M. & Nielsen, N. C. (2016). In situ high-resolution structure of the baseplate antenna complex in Chlorobaculum tepidum. Nature Communications, 7, [12454]. https://doi.org/10.1038/ncomms12454

Mittag, T., Christensen, K. L., Lindsay, K., Nielsen, N. C. & Skrydstrup, T. (2008). Direct Entry to Peptidyl Ketones via SmI2-Mediated C−C Bond Formation with Readily Accessible N-Peptidyl Oxazolidinones. Journal of Organic Chemistry, 73(3), 1088–1092. https://doi.org/10.1021/jo702286b

Mittag, T., Nielsen, N. C., Otzen, D. & Skrydstrup, T. (2009). Synthesis of a Ketomethylene Isostere of the Fibrillating Peptide SNNFGAILSS. Journal of Organic Chemistry, 74, 7955-7957.

Meissner, A., Moskau, D., Nielsen, N. C. & Sørensen, O. W. (1997). Proton-Detected¹³C-¹³C Double-Quantum Coherence. Journal of Magnetic Resonance, 124(1), 245-249.

Maximov, I., Tosner, Z. & Nielsen, N. C. (2008). Optimal control design of NMR and dynamic nuclear polarization experiments using monotonically convergent algorithms. Journal of Chemical Physics, 128, 184505. https://doi.org/10.1063/1.2903458

Maximov, I. I., Salomon, J., Turinici, G. & Nielsen, N. C. (2010). A smoothing monotonic convergent optimal control algorithm for nuclear magnetic resonance pulse sequence design. Journal of Chemical Physics, 132(8). https://doi.org/10.1063/1.3328783

Maximov, I. I., Vinding, M. S., Tse, D. H. Y., Nielsen, N. C. & Shah, N. J. (2015). Real-time 2D spatially selective MRI experiments: Comparative analysis of optimal control design methods. Journal of Magnetic Resonance, 254(110-120), 110-120. https://doi.org/10.1016/j.jmr.2015.03.003

Mantel, M., Søbjerg, L. S., Huynh, T. H. V., Ebran, J-P., Lindhardt, A. T., Nielsen, N. C. & Skrydstrup, T. (2008). An Expedient Synthesis of the Fibril Binding Compound FSB via Sequential Pd-Catalyzed Coupling Reactions. Journal of Organic Chemistry, 73(9), 3570–3573. https://doi.org/10.1021/jo7026189

Malmendal, A., Vander Kooi, C. W., Nielsen, N. C. & Chazin, W. (2005). Calcium-modulated S100 protein-phospholipic interactions. An NMR study of calbindin D9k and DPC. Biochemistry, 44, 6502-6512.

Displaying results 101 to 150 out of 290

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Revised 17.04.2023

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Lise Refstrup Linnebjerg Pedersen