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Interdisciplinary Nanoscience Center

Danish Center for Ultrahigh Field NMR Spectroscopy

Publications

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Pedersen, M. Ø., Underhaug, J., Dittmer, J., Miller, M. & Nielsen, N. C. (2008). The three-dimensional structure of CsmA: A small antenna protein from the green sulfur bacterium Chlorobium tepidum. FEBS Letters, 582(19), 2869-2874. https://doi.org/10.1016/j.febslet.2008.07.020

Nielsen, N. C. & Khaneja, N. (2008). Triple Oscillating Field Technique for Accurate Distance Measurements by Solid-State NMR. Journal of Chemical Physics, 128, 015103.

Nielsen, N. C., Nielsen, J. T. & Tosner, Z. (2008). When proteins aggregate. In The Villum Kann Rasmussen Foundation and Velux Foundation Annual Report 2008

Bertelsen, K., Pedersen, J. M., Nielsen, N. C. & Vosegaard, T. (2007). 2D separated-local field spectra from projections of 1D experiments. Journal of Magnetic Resonance, 184, 330-6.

Sivertsen, A. C., Gasior, M., Bjerring, M., Hansen, S. U., Lopez, O. L., Nielsen, N. C. & Bols, M. (2007). Active Site Protonation of 1-Azafagomine in Glucosidases Studied by Solid-State NMR Spectroscopy. European Journal of Organic Chemistry, 1735-1742. https://doi.org/10.1002/ejoc.200600816

Nielsen, N. C., Malmendal, A., Bertram, H. C., Petersen, B. O., Madsen, J. C., Pedersen, H., Hoppe, C., Mølgaard, C., Michaelsen, K. F. & Duus, J. Ø. (2007). Effect of magnetic field strength on NMR-based metabonomic of human urine data - A comparative study of 250, 400, 500 and 800 MHz. Bunseki, 79(18), 7110-7115.

Nielsen, N. C., Vosegaard, T., Ishijima, M. K. & Watts, A. (2007). Helix Conformations in 7TM Membrane Protein Determined using Oriented Sample Solid-State NMR. Biophysical Journal, 94, 241-250.

Nielsen, N. C., Malmendal, A., Vestergaard, M., Oksbjerg, N., Young, J. F., Bertram, H. C., Theil, P. K., Petersen, A.-G. D., Poulsen, K. A. & Rasmussen, M. (2007). In vito and in vivo studies of cretine monohydrate supplementation to Duroc and Landrace pigs. Meat Science, 76, 342-51.

Bertelsen, K., Pedersen, J. M., Rasmussen, B. S., Skrydstrup, T., Nielsen, N. C. & Vosegaard, T. (2007). Membrane-bound conformation of peptaibols with methyl-deuterated a-amino isobutyric acids by ²H solid-state NMR spectroscopy. Journal of the American Chemical Society, 129, 14717-14723.

Overgaard, J., Malmendal, A., Sørensen, J. G., Bundy, J. G., Loeschcke, V., Nielsen, N. C. & Holmstrup, M. (2007). Metabolomic profiling of rapid cold hardening and cold shock in Drosophila melanogaster. Journal of Insect Physiology, 53(12), 1218-1232. http://dx.doi.org/10.1016/j.jinsphys.2007.06.012

Hansen, J. Ø., Kehlet, C., Bjerring, M., Vosegaard, T., Glaser, S., Khaneja, N. & Nielsen, N. C. (2007). Optimal control based design of composite dipolar recoupling experiments by analogy to single-spin inversion pulses. Chemical Physics Letters, 447, 154-161. https://doi.org/10.1016/j.cplett.2007.08.072

Kehlet, C., Bjerring, M., Sivertsen, A. C., Kristensen, T., Enghild, J. J., Glaser, S. J., Khaneja, N. & Nielsen, N. C. (2007). Optimal control based NCO and NCA experiments for spectral assignment in biological solid-state NMR spectroscopy. Journal of Magnetic Resonance, 188(2), 216-230. https://doi.org/10.1016/j.jmr.2007.06.011

Bjerring, M., Nielsen, J. S., Nielsen, N. C. & Krebs, F. C. (2007). Polythiophene by solution processing. Macromolecules, 40, 6012-6013. https://doi.org/10.1021/ma071200z

Nielsen, L., Lindsay, K., Faber, J., Nielsen, N. C. & Skrydstrup, T. (2007). Stereocontrolled Synthesis of Methyl Silanediol Peptide Mimics. Journal of Organic Chemistry, 72, 10035-10044.

Hjørringgaard, C. U., Nielsen, N. C., Pedersen, J. M. & Skrydstrup, T. (2007). Templated Multimers of Antimicrobial Peptides. Poster session presented at iNANO Autumn School, Fuglsø Centret, Denmark.

Petersen, S. V., Valnickova, Z., Oury, T. D., Crapo, J. D., Nielsen, N. C. & Enghild, J. J. (2007). The Subunit Composition of Human Extracellylar Superoxide Dismutate (EC-SOD) Regulate Enzymatic Activity. B M C Biochemistry, 8, 19.

Andersen, L. M., Wind, T., Hansen, H. D., Blouse, G., Christensen, A., Jensen, J. K., Malmendal, A., Nielsen, N. C. & Andreasen, P. (2007). Urokinase-type plasminogen activator-inhibiting cyclic peptides demonstrate new modalities for inhibition of serine proteases. Poster session presented at XIth International Workshop on Molecular and Cellular Biology of Plasminogen Activation, Stockholm, Sweden.

Nielsen, N. C., Vosegaard, T. & Malmendal, A. (2006). Analytical and Numerical Tools for Experiment Design in Solid-State NMR Spectroscopy. In Handbook of Modern Magnetic Resonance

Jakobsen, L. O., Malmendahl, A., Nielsen, N. C. & Esmann, M. (2006). Cation Binding in Na,K-ATPase, Investigated by 205Tl Solid-State NMR Spectroscopy. Biochemistry, 45, 10768-10776. https://doi.org/10.1021/bi060642k

Jakobsen, L. O., Malmendal, A., Nielsen, N. C. & Esmann, M. (2006). Cation binding in Na,K-ATPase investigated using ²⁰⁵Tl solid-state NMR spectroscopy. Biochemistry, 45, 10768-10776.

Khaneja, N., Kehlet, C., Glaser, S. J. & Nielsen, N. C. (2006). Composite dipolar recoupling: anisotropy compensated coherence transfer in solid-state NMR. Journal of Chemical Physics, 124, 114503-1 - 114503-7.

Tosner, Z., Glaser, S. J., Khaneja, N. & Nielsen, N. C. (2006). Effective hamiltonians by optimal control: solid-state NMR double-quantum and isotropic dipolar recoupling. Journal of Chemical Physics, 125, 184502-1 - 184502-10.

Jensen, J. K., Malmendal, A., Schiøtt, B., Skeldal, S., Pedersen, K. E., Celik, L., Nielsen, N. C., Andreasen, P. & Wind, T. (2006). Inhibition of plasminogen activator inhibitor-1 binding to endocytosis receptors of the low density lipoprotein receptor family by a peptide isolated from a phage displayed library. Biochem. J., 399, 387-396.

Malmendal, A., Overgaard, J., Bundy, J. G., Sørensen, J. G., Nielsen, N. C., Loeschcke, V. & Holmstrup, M. (2006). Metabolomic profiling of heat stress: hardening and recovery of homeostasis in Drosophila. American Journal of Physiology: Regulatory, Integrative and Comparative Physiology, 291(1), R205-12. http://ajpregu.physiology.org/cgi/content/abstract/291/1/R205

Bertram, H. C., Bach Knudsen, K. E., Serena, A., Malmendal, A., Nielsen, N. C., Fretté, X. C. & Andersen, H. J. (2006). NMR-based metabonomic studies reveal changes in the biochemical profile of plasma and urine from pigs fed high fibre rye bread. British J. Nutr., 65, 955-962.

Underhaug, J., Jakobsen, L. O., Esmann, M., Malmendal, A. & Nielsen, N. C. (2006). NMR studies of the fifth transmembrane segment of Na⁺,K⁺-ATPase reveals a non-helical ion-binding region. FEBS Letters, 580, 4777-4783.

Dupont, D. M., Hansen, M., Jensen, J. K., Kristiansen, S. K., Mathiasen, L., Pedersen, K. E., Skeldal, S., Wind, T., Malmendal, A., Schiøtt, B., Nielsen, N. C. & Andreasen, P. (2006). Novel conformational probes and activity regulators of plasminogen avtivator inhibitor-1, isolated from phage-displayed disulfide bridge constrained peptide libraries. Poster session presented at Annual Meeting of the "Cancer Degradome", København, Denmark.

Kehlet, C. & Nielsen, N. C. (2006). Solid-State NMR Experiments by Optimal Control. Bruker Report, 157, 31-34. http://www.bruker-est.com/fileadmin/be_user/News_Events/SpinReport/SpinReport157_31-34.pdf

Bertram, H. C., Kristensen, N. B., Malmendal, A., Nielsen, N. C., Bro, R., Andersen, H. J. & Harmon, D. L. (2005). A metabolomic investigation of splanchnic metabolism using 1H NMR spectroscopy of bovine blood plasma. Analystica Chimica Acta, 536, 1-6.

Malmendal, A., Vander Kooi, C. W., Nielsen, N. C. & Chazin, W. (2005). Calcium-modulated S100 protein-phospholipic interactions. An NMR study of calbindin D9k and DPC. Biochemistry, 44, 6502-6512.

Nielsen, N. C. (2005). Computational Aspects of Biological Solid-State NMR Spectroscopy. In NMR Spectroscopy of Biological Solids (pp. Chapter 11). Taylor & Francis.

Vosegaard, T., Kehlet, C. T., Khaneja, N., Glaser, S. J. & Nielsen, N. C. (2005). Improved excitation schemes for multiple-quantum magic-angle spinning for quadrupolar nuclei designed using optimal control theory. Journal of the American Chemical Society, 127, 13768-13769.

Kehlet, C. T., Vosegaard, T., Khaneja, N., Glaser, S. J. & Nielsen, N. C. (2005). Low-power homonuclear dipolar recoupling in solid-state NMR developed using optimal control theory. Chemical Physics Letters, 414, 204-209.

Sivertsen, A. C., Bjerring, M., Kehlet, C. T., Vosegaard, T. & Nielsen, N. C. (2005). Numerical Simulations in Biological Solid-State NMR Spectroscopy. Ann. R. NMR. S., 54, 243-293.

Kamihira, M., Vosegaard, T., Mason, A. J., Straus, S. K., Nielsen, N. C. & Watts, A. (2005). Structural and orientational constraints of bacteriorhodopsin in purple membranes determined by oriented-sample solid-state NMR spectroscopy. J. Struct. Biol., 149, 7-16.

Bertram, H. C., Kristensen, N. B., Malmendal, A., Nielsen, N. C., Jensen, S. K. & Harnon, D. L. (2004). An NMR-based metabolomic approach to assess metabolism in splanchnic tissues of steers. J. Anim. Feed Sci., 13, 295-298.

Siminovitch, D., Untidt, T. S. & Nielsen, N. C. (2004). Exact effective Hamiltonian theory. II: Expansion of matrix functions and entangled unitary exponential operators. Journal of Chemical Physics, 120, 51-66.

Vosegaard, T. & Nielsen, N. C. (2004). Improved pulse sequences for pure exchange solid-state NMR spectroscopy. Magn. Reson. Chem., 42(2), 285-290.

Kehlet, C. T., Sivertsen, A. C., Bjerring, M., Reiss, T. O., Khaneja, N., Glaser, S. J. & Nielsen, N. C. (2004). Improving Solid-State NMR Dipolar Recoupling by Optimal Control. Journal of the American Chemical Society, 126, 10202-10203.

Nielsen, N. C., Malmendal, A. & Vosegaard, T. (2004). Techniques and Applications of NMR to Membrane Proteins. Mol. Membr. Biol., 21, 129-141.

Bjerring, M., Rasmussen, J. T., Krogshave, R. S. & Nielsen, N. C. (2003). Heteronuclear coherence transfer in solid-state NMR using a gamma-encoded transferred echo experiment. Journal of Chemical Physics, 119, 8916-8926. https://doi.org/10.1063/1.1613933

Bjerring, M. & Nielsen, N. C. (2003). Solid-state NMR heteronuclear dipolar recoupling using off-resonance symmetry-based pulse sequences. Chemical Physics Letters, 370, 496-503. https://doi.org/10.1016/S0009-2614(03)00103-9

Jakobsen, L. O., Nielsen, N. C. & Esmann, M. (2003). Interactions between cations and Na,K-ATPase membranes studied by solid-state NMR. New York Academy of Sciences. Annals, 986, 290-292.

Bjerring, M., Vosegaard, T., Malmendal, A. & Nielsen, N. C. (2003). Methodological development of solid-state NMR for characterization of membrane proteins. Concepts Magn. Reson., 18A, 111-129.

Nielsen, G., Malmendal, A., Meissner, A., Møller, J. V. & Nielsen, N. C. (2003). NMR studies of the fifth transmembrane segment of sarcoplasmic reticulum Ca₂+-ATPase reveals a hinge close to the Ca₂+ ligating residues. FEBS Letters, 544, 50-56.

Bjerring, M. & Nielsen, N. C. (2003). Solid-state NMR heteronuclear coherence transfer using phase and amplitude modulated rf irradiation at the Hartmann–Hahn sideband conditions. Chemical Physics Letters, 382, 671-678. https://doi.org/10.1016/j.cplett.2003.10.120

Bjerring, M. & Nielsen, N. C. (2003). Solid-state NMR heteronuclear dipolar recoupling using off-resonance symmetry-based pulse sequences. Chemical Physics Letters, 370, 496-503.

Untidt, T. S. & Nielsen, N. C. (2002). Closed solution to the Baker-Campbell-Hausdorff problem: exact effective Hamiltonian theory for analysis of nuclear-magnetic resonance experiments. Physical Review E, 65(2).

Bak, M., Schultz, R., Vosegaard, T. & Nielsen, N. C. (2002). Specification and visualization of anisotropic interaction tensors for numerical simulation of solid-state NMR experiments on polypeptide structures. Journal of Magnetic Resonance, 154.

Vosegaard, T., Malmendal, A. & Nielsen, N. C. (2002). The flexibility of SIMPSON and SIMMOL for numerical simulations in solid- and liquid-state NMR spectroscopy. Chem. Monthly, 133, 1555-1574.

Displaying results 201 to 250 out of 299

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Revised 17.04.2023

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Lise Refstrup Linnebjerg Pedersen