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Asthana, P., Singh, D., Pedersen, J. S., Hynönen, M. J., Sulu, R., Murthy, A. V., Laitaoja, M., Jänis, J., Riley, L. W. & Venkatesan, R. (2021). Structural insights into the substrate-binding proteins Mce1A and Mce4A from Mycobacterium tuberculosis. IUCrJ, 8(Part 5), 757-774. https://doi.org/10.1107/S2052252521006199

Harwood, S. L., Lyngsø, J., Zarantonello, A., Kjøge, K., Nielsen, P. K., Andersen, G. R., Pedersen, J. S. & Enghild, J. J. (2021). Structural Investigations of Human A2M Identify a Hollow Native Conformation That Underlies Its Distinctive Protease-Trapping Mechanism. Molecular and Cellular Proteomics, 20, Article 100090. https://doi.org/10.1016/J.MCPRO.2021.100090

Jakubauskas, D., Jansen, M., Lyngsø, J., Cheng, Y., Pedersen, J. S. & Cárdenas, M. (2021). Toward reliable low-density lipoprotein ultrastructure prediction in clinical conditions: A small-angle X-ray scattering study on individuals with normal and high triglyceride serum levels. Nanomedicine: Nanotechnology, Biology, and Medicine, 31, Article 102318. https://doi.org/10.1016/j.nano.2020.102318

Mortensen, H. G., Otzen, D. E. & Pedersen, J. S. (2021). Ubiquitin forms conventional decorated micelle structures with sodium dodecyl sulfate at saturation. Journal of Colloid and Interface Science, 596, 233-244. https://doi.org/10.1016/j.jcis.2021.03.110

Pedersen, J. N., Lyngsø, J., Zinn, T., Otzen, D. & Pedersen, J. S. (2020). A complete picture of protein unfolding and refolding in surfactants. Chemical Science, 11(3), 699-712. https://doi.org/10.1039/C9SC04831F

Larsen, A. H., Pedersen, J. S. & Arleth, L. (2020). Assessment of structure factors for analysis of small-angle scattering data from desired or undesired aggregates. Journal of Applied Crystallography, 53(Part 4), 991-1005. https://doi.org/10.1107/S1600576720006500

Bergman, M. J., Pedersen, J. S., Schurtenberger, P. & Boon, N. (2020). Controlling the morphology of microgels by ionic stimuli. Soft Matter, 16(11), 2786-2794. https://doi.org/10.1039/c9sm02170a

Vilstrup, J., Simonsen, A., Birkefeldt, T., Strandbygård, D., Lyngsø, J., Pedersen, J. S. & Thirup, S. (2020). Crystal and solution structures of fragments of the human leucocyte common antigen-related protein. Acta crystallographica Section D: Structural biology , 76, 406-417. https://doi.org/10.1107/S2059798320003885

Fehér, B., Lyngsø, J., Bartók, B., Mihály, J., Varga, Z., Mészáros, R., Pedersen, J. S., Bóta, A. & Varga, I. (2020). Effect of pH on the conformation of bovine serume albumin - gold bioconjugates. Journal of Molecular Liquids, 309, Article 113065. https://doi.org/10.1016/j.molliq.2020.113065

Jensen, G. V., Pedersen, J. N., Otzen, D. E. & Pedersen, J. S. (2020). Multi-Step Unfolding and Rearrangement of α-Lactalbumin by SDS Revealed by Stopped-Flow SAXS. Frontiers in Molecular Biosciences, 7, Article 125. https://doi.org/10.3389/fmolb.2020.00125

Nagaraj, M., Ahmed, M., Lyngsø, J., Vad, B. S., Bøggild, A., Fillipsen, A., Pedersen, J. S., Otzen, D. E. & Akbey, Ü. (2020). Predicted Loop Regions Promote Aggregation: A Study of Amyloidogenic Domains in the Functional Amyloid FapC. Journal of Molecular Biology, 432(7), 2232-2252. https://doi.org/10.1016/j.jmb.2020.01.044

Fogang, L. T., Solling, T. I., Pedersen, J. S., Kamal, M. S. & Sultan, A. S. (2020). Real-time monitoring of oil-induced micellar transitions in viscoelastic surfactants by small-angle X-ray scattering. Journal of Colloid and Interface Science, 580, 399-406. https://doi.org/10.1016/j.jcis.2020.07.042

Ramírez-Rodríguez, G. B., Miguel-Rojas, C., Montanha, G. S., Carmona, F. J., Dal Sasso, G., Sillero, J. C., Pedersen, J. S., Masciocchi, N., Guagliardi, A., Pérez-De-luque, A. & Delgado-López, J. M. (2020). Reducing nitrogen dosage in triticum durum plants with urea-doped nanofertilizers. Nanomaterials, 10(6), Article 1043. https://doi.org/10.3390/nano10061043

Pedersen, J. N., Frislev, H. K. S., Pedersen, J. S. & Otzen, D. (2020). Structures and mechanisms of formation of liprotides. B B A - Proteins and Proteomics, 1868(11), Article 140505. https://doi.org/10.1016/j.bbapap.2020.140505

Carmona, F. J., Dal Sasso, G., Bertolotti, F., Ramírez-Rodríguez, G. B., Delgado-López, J. M., Pedersen, J. S., Masciocchi, N. & Guagliardi, A. (2020). The role of nanoparticle structure and morphology in the dissolution kinetics and nutrient release of nitrate-doped calcium phosphate nanofertilizers. Scientific Reports, 10(1), Article 12396. https://doi.org/10.1038/s41598-020-69279-2

Rasmussen, H. Ø., Enghild, J. J., Otzen, D. E. & Pedersen, J. S. (2020). Unfolding and partial refolding of a cellulase from the SDS-denatured state: From β-sheet to α-helix and back. B B A - General Subjects, 1864(1), 129434 1-12. Article 129434. https://doi.org/10.1016/j.bbagen.2019.129434

Nickel, A. C., Scotti, A., Houston, J. E., Ito, T., Crassous, J., Pedersen, J. S. & Richtering, W. (2019). Anisotropic Hollow Microgels That Can Adapt Their Size, Shape, and Softness. Nano Letters, 19(11), 8161-8170. https://doi.org/10.1021/acs.nanolett.9b03507

Lopes, P., Koschorreck, K., Nedergaard Pedersen, J., Ferapontov, A., Lörcher, S., Skov Pedersen, J., Urlacher, V. B. & Ferapontova, E. E. (2019). Bacillus Licheniformis CotA Laccase Mutant: ElectrocatalyticReduction of O ₂ from 0.6 V (SHE) at pH 8 and in Seawater. ChemElectroChem, 6(7), 2043-2049. https://doi.org/10.1002/celc.201900363

Najarzadeh, Z., Pedersen, J. N., Christiansen, G., Shojaosadati, S. A., Pedersen, J. S. & Otzen, D. E. (2019). Bacterial amphiphiles as amyloid inducers: Effect of Rhamnolipid and Lipopolysaccharide on FapC fibrillation. B B A - Proteins and Proteomics, 1867(11), Article 140263. https://doi.org/10.1016/j.bbapap.2019.140263

Sah-Teli, S. K., Hynonen, M. J., Schmitz, W., Geraets, J. A., Seitsonen, J., Pedersen, J. S., Butcher, S. J., Wierenga, R. K. & Venkatesan, R. (2019). Complementary substrate specificity and distinct quaternary assembly of the Escherichia coli aerobic and anaerobic beta-oxidation trifunctional enzyme complexes. Biochemical Journal, 476(13), 1975-1994. https://doi.org/10.1042/BCJ20190314

Fehér, B., Zhu, K., Nyström, B., Varga, I. & Pedersen, J. S. (2019). Effect of Temperature and Ionic Strength on Micellar Aggregates of Oppositely Charged Thermoresponsive Block Copolymer Polyelectrolytes. Langmuir, 35(42), 13614-13623. https://doi.org/10.1021/acs.langmuir.9b01896

Zhou, Y., Jones, N. C., Pedersen, J. N., Perez, B., Hoffmann, S. V., Petersen, S. V., Pedersen, J. S., Perriman, A., Kristensen, P., Gao, R. & Guo, Z. (2019). Insight into the structure and activity of surface-engineered lipase biofluids. ChemBioChem, 20(10), 1266-1272. https://doi.org/10.1002/cbic.201800819

Amann, M., Diget, J. S., Lyngsø, J., Pedersen, J. S., Narayanan, T. & Lund, R. (2019). Kinetic Pathways for Polyelectrolyte Coacervate Micelle Formation Revealed by Time-Resolved Synchrotron SAXS. Macromolecules, 52(21), 8227-8237. https://doi.org/10.1021/acs.macromol.9b01072

Jansen, M. A. A., Klausen, L. H., Thanki, K., Lyngsø, J., Skov Pedersen, J., Franzyk, H., Nielsen, H. M., van Eden, W., Dong, M., Broere, F., Foged, C. & Zeng, X. (2019). Lipidoid-polymer hybrid nanoparticles loaded with TNF siRNA suppress inflammation after intra-articular administration in a murine experimental arthritis model. European Journal of Pharmaceutics and Biopharmaceutics, 142, 38-48. https://doi.org/10.1016/j.ejpb.2019.06.009

Pedersen, J. N., Jiang, Z., Christiansen, G., Lee, J. C., Pedersen, J. S. & Otzen, D. E. (2019). Lysophospholipids induce fibrillation of the repeat domain of Pmel17 through intermediate core-shell structures. Biochimica et Biophysica Acta - Proteins and Proteomics, 1867(5), 519-528. https://doi.org/10.1016/j.bbapap.2018.11.007

Gounani, Z., Asadollahi, M. A., Pedersen, J. N., Lyngsø, J., Pedersen, J. S., Arpanaei, A. & Meyer, R. L. (2019). Mesoporous silica nanoparticles carrying multiple antibiotics provide enhanced synergistic effect and improved biocompatibility. Colloids and Surfaces B: Biointerfaces, 175, 498-508. https://doi.org/10.1016/j.colsurfb.2018.12.035

Poghosyan, A. H., Schafer, N., Lyngsø, J., Shahinyan, A. A., Pedersen, J. S. & Otzen, D. (2019). Molecular dynamics study of ACBP denaturation in alkyl sulfates demonstrates possible pathways of unfolding through fused surfactant clusters. Protein Engineering, Design and Selection, 32(4), 175-190. Article gzz037. https://doi.org/10.1093/protein/gzz037

Najarzadeh, Z., Mohammad-Beigi, H., Pedersen, J. N., Christiansen, G., Sønderby, T. V., Shojaosadati, S. A., Morshedi, D., Strømgaard, K., Meisl, G., Sutherland, D., Pedersen, J. S. & Otzen, D. (2019). Plant polyphenols inhibit functional amyloid and biofilm formation in Pseudomonas strains by directing monomers to off-pathway oligomers. Biomolecules, 9(11), Article 659. https://doi.org/10.3390/biom9110659

Højgaard, C., Sørensen, H. V., Pedersen, J. S., Winther, J. R. & Otzen, D. E. (2018). Can a Charged Surfactant Unfold an Uncharged Protein? Biophysical Journal, 115(11), 2081-2086. https://doi.org/10.1016/j.bpj.2018.10.022

Falk, Y. Z., Engblom, J., Pedersen, J. S., Arnebrant, T. & Kocherbitov, V. (2018). Effects of Hydration on Structure and Phase Behavior of Pig Gastric Mucin Elucidated by SAXS. Journal of Physical Chemistry B, 122(30), 7539-7546. https://doi.org/10.1021/acs.jpcb.8b05496

Pérez, B., Coletta, A., Pedersen, J. N., Petersen, S. V., Periole, X., Pedersen, J. S., Sessions, R. B., Guo, Z., Perriman, A. & Schiøtt, B. (2018). Insight into the molecular mechanism behind PEG-mediated stabilization of biofluid lipases. Scientific Reports, 8(1), Article 12293. https://doi.org/10.1038/s41598-018-29871-z

Nedergaard Pedersen, J., Skov Pedersen, J. & Otzen, D. E. (2018). Liprotides assist in folding of outer membrane proteins. Protein Science, 27(2), 451-462. https://doi.org/10.1002/pro.3337

Mortensen, S. A., Sander, B., Jensen, R. K., Pedersen, J. S., Golas, M. M., Thiel, S. & Andersen, G. R. (2018). Models of the complement C1 complex. Proceedings of the National Academy of Sciences (PNAS), 115(17), E3866. Article E3866. https://doi.org/10.1073/pnas.1803577115

Kurnik, M., Sahin, C., Andersen, C. B., Lorenzen, N., Giehm, L., Mohammad-Beigi, H., Jessen, C. M., Pedersen, J. S., Christiansen, G., Petersen, S. V., Staal, R., Krishnamurthy, G., Pitts, K., Reinhart, P. H., Mulder, F. A. A., Mente, S., Hirst, W. D. & Otzen, D. E. (2018). Potent α-Synuclein Aggregation Inhibitors, Identified by High-Throughput Screening, Mainly Target the Monomeric State. Cell Chemical Biology, 25(11), 1389-1402. https://doi.org/10.1016/j.chembiol.2018.08.005

Nedergaard Pedersen, J., Wilhelmus Johannes Maria Frederix, P., Skov Pedersen, J., Marrink, S. J. & Otzen, D. (2018). Role of charge and hydrophobicity in liprotide formation: a molecular dynamics study with experimental constraints. ChemBioChem, 19(3), 263–271. https://doi.org/10.1002/cbic.201700496

Moscheni, D., Bertolotti, F., Piveteau, L., Protesescu, L., Dirin, D. N., Kovalenko, M. V., Cervellino, A., Pedersen, J. S., Masciocchi, N. & Guagliardi, A. (2018). Size-Dependent Fault-Driven Relaxation and Faceting in Zincblende CdSe Colloidal Quantum Dots. ACS Nano, 12(12), 12558-12570. https://doi.org/10.1021/acsnano.8b07092

Mortensen, H. G., Jensen, G. V., Hansen, S. K., Vosegaard, T. & Pedersen, J. S. (2018). Structure of phospholipid mixed micelles (Bicelles) studied by small-angle X-ray scattering. Langmuir, 34(48), 14597-14607. https://doi.org/10.1021/acs.langmuir.8b02704

Steiner, E. M., Lyngsø, J., Guy, J. E., Bourenkov, G., Lindqvist, Y., Schneider, T. R., Pedersen, J. S., Schneider, G. & Schnell, R. (2018). The structure of the N-terminal module of the cell wall hydrolase RipA and its role in regulating catalytic activity. Proteins: Structure, Function and Bioinformatics, 86(9), 912-923. https://doi.org/10.1002/prot.25523

Keidel, R., Ghavami, A., Lugo, D. M., Lotze, G., Virtanen, O., Beumers, P., Pedersen, J. S., Bardow, A., Winkler, R. G. & Richtering, W. (2018). Time-resolved structural evolution during the collapse of responsive hydrogels: The microgel-to-particle transition. Science Advances, 4(4), Article eaao7086. https://doi.org/10.1126/sciadv.aao7086

Sahin, C., Kjær, L., Christensen, M. S., Nedergaard Pedersen, J., Christiansen, G., Pérez, A.-M. W., Moller, I. M., Enghild, J., Pedersen, J. S., Larsen, K. & Otzen, D. E. (2018). α-synucleins from animal species show low fibrillation propensities and weak oligomer membrane disruption. Biochemistry, 57(34), 5145-5158. https://doi.org/10.1021/acs.biochem.8b00627

Skoglund, S., Blomberg, E., Wallinder, I. O., Grillo, I., Pedersen, J. S. & Bergstrom, L. M. (2017). A novel explanation for the enhanced colloidal stability of silver nanoparticles in the presence of an oppositely charged surfactant. Physical Chemistry Chemical Physics, 19(41), 28037-28043. https://doi.org/10.1039/c7cp04662f

Alves, C., Pedersen, J. S. & Oliveira, C. L. P. (2017). Calculation of two-dimensional scattering patterns for oriented systems. Journal of Applied Crystallography, 50(3), 840-850. https://doi.org/10.1107/S1600576717005179

Bertolotti, F., Protesescu, L., Kovalenko, M. V., Yakunin, S., Cervellino, A., Billinge, S. J. L., Terban, M. W., Pedersen, J. S., Masciocchi, N. & Guagliardi, A. (2017). Coherent Nanotwins and Dynamic Disorder in Cesium Lead Halide Perovskite Nanocrystals. A C S Nano, 11(4), 3819-3831. https://doi.org/10.1021/acsnano.7b00017

Manuguerra, I., Grossi, G., Thomsen, R. P., Lyngsø, J., Pedersen, J. S., Kjems, J., Andersen, E. S. & Gothelf, K. V. (2017). Construction of a Polyhedral DNA 12-Arm Junction for Self-Assembly of Wireframe DNA Lattices. A C S Nano, 11(9), 9041-9047. https://doi.org/10.1021/acsnano.7b03538

Malmos, K. G., Bjerring, M., Jessen, C. M., Nielsen, E. H. T., Poulsen, E. T., Christiansen, G., Vosegaard, T., Skrydstrup, T., Enghild, J. J., Pedersen, J. S. & Otzen, D. E. (2017). Correction to: How glycosaminoglycans promote fibrillation of salmon calcitonin. Journal of Biological Chemistry, 292(38), 15992. https://doi.org/10.1074/jbc.A116.715466

Madsen, J. K., Kaspersen, J. D., Andersen, C. B., Nedergaard Pedersen, J., Andersen, K. K., Pedersen, J. S. & Otzen, D. E. (2017). Glycolipid Biosurfactants Activate, Dimerize, and Stabilize Thermomyces lanuginosus Lipase in a pH-Dependent Fashion. Biochemistry, 56(32), 4256-4268. https://doi.org/10.1021/acs.biochem.7b00420

Antoniuk, I., Plazzotta, B., Wintgens, V., Volet, G., Nielsen, T. T., Pedersen, J. S. & Amiel, C. (2017). Host-guest interaction and structural ordering in polymeric nanoassemblies: Influence of molecular design. International Journal of Pharmaceutics, 531(2), 433-443. https://doi.org/10.1016/j.ijpharm.2017.02.061

Bayati, S., Bergquist, K.-E., Zhu, K., Nystrom, B., Pedersen, J. S., Galantini, L. & Schillen, K. (2017). Mixed micelles of oppositely charged poly(N-isopropylacrylamide) diblock copolymers. Journal of Polymer Science. Part B, Polymer Physics, 55(19), 1457-1469. https://doi.org/10.1002/polb.24403

Maric, S., Lind, T. K., Lyngsø, J., Cárdenas, M. & Pedersen, J. S. (2017). Modeling Small-Angle X-ray Scattering Data for Low-Density Lipoproteins: Insights into the Fatty Core Packing and Phase Transition. ACS Nano, 11(1), 1080-1090. https://doi.org/10.1021/acsnano.6b08089

Mortensen, H. G., Madsen, J. K., Andersen, K. K., Vosegaard, T., Deen, G. R., Otzen, D. E. & Pedersen, J. S. (2017). Myoglobin and α-Lactalbumin Form Smaller Complexes with the Biosurfactant Rhamnolipid Than with SDS. Biophysical Journal, 113(12), 2621-2633. https://doi.org/10.1016/j.bpj.2017.10.024

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Revised 17.04.2023