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Interdisciplinary Nanoscience Center

Publications

We publish in a broad array of journals… To view list of publications related to nanoscience/technology by scientists associated with iNANO

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Farjami, E., Clima, L., Gothelf, K. V. & Ferapontova, E. (2011). “Off−On” Electrochemical Hairpin-DNA-Based Genosensor for Cancer Diagnostics. Analytical Chemistry, 83(5), 1594-1602. https://doi.org/10.1021/ac1032929

Álvarez-Martos, I. & Ferapontova, E. (2018). “Negative electrocatalysis”-based specific analysis of dopamine at basal plane HOPG in the presence of structurally related catecholamines. Electrochemistry Communications, 89, 48-51. https://doi.org/10.1016/j.elecom.2018.02.019

Clausen, H. F., Christensen, M., Spackman, M. & Iversen, B. B. (2010). β-hydroquinone: Intermolecular Interactions in Host-Guest Systems. Poster session presented at Gordon Research Conferences: Electron Distribution and Chemical Bonding, South Hadley, United States.

Clausen, H. F., Iversen, B. B., Christensen, M. & Spackman, M. (2009). β-hydroquinone clathrate: Insight into host-guest chemistry. Poster session presented at iNANO annual meeting, Århus, Denmark.

Clausen, H. F., Iversen, B. B. & Spackman, M. (2009). β-hydroquinone acetonitrile clathrate: Insight into host-guest chemistry. Poster session presented at Nordforsk Research Training Course on the Application of Synchrotron Radiaiton in Chemistry, Physics and Biology, Sønderborg, Denmark.

Clausen, H. F., Iversen, B. B. & Spackman, M. (2009). β-hydroquinone acetonitrile clathrate: Insight in to host-guest chemistry. Poster session presented at 39th Danish Crystallography and DanScatt annual meeting, Lyngby, Denmark.

Sahin, C., Kjær, L., Christensen, M. S., Nedergaard Pedersen, J., Christiansen, G., Pérez, A-M. W., Moller, I. M., Enghild, J., Pedersen, J. S., Larsen, K. & Otzen, D. E. (2018). α-synucleins from animal species show low fibrillation propensities and weak oligomer membrane disruption. Biochemistry, 57(34), 5145-5158. https://doi.org/10.1021/acs.biochem.8b00627

Alam, P., Bousset, L., Melki, R. & Otzen, D. E. (2019). α-synuclein oligomers and fibrils: a spectrum of species, a spectrum of toxicities. Journal of Neurochemistry, 150(5), 522-534. https://doi.org/10.1111/jnc.14808

Otzen, D., Sehgal, P. & Westh, P. (2009). α-lactalbumin is unfolded by all classes of detergents but with different mechanisms. Journal of Colloid and Interface Science, 329, 273-283.

Christiansen, J. R., Olesen, M. N., Otzen, D. E., Romero-Ramos, M. & Sanchez-Guajardo, V. (2016). α-Synuclein vaccination modulates regulatory T cell activation and microglia in the absence of brain pathology. Journal of Neuroinflammation, 13, [74]. https://doi.org/10.1186/s12974-016-0532-8

van Diggelen, F., Tepper, A., Petri, M. & Otzen, D. (2017). α-Synuclein Oligomers: A Study in Diversity. Israel Journal of Chemistry, 57(7-8), 699-723. https://doi.org/10.1002/ijch.201600116

Sattler, M., Schleucher, J., Schedledtzky, O., Glaser, S. J., Griesinger, C., Nielsen, N. C. & Sørensen, O. W. (1996). α&β HSQC, an HSQC-Type Experiment with Improved Resolution for I₂S Groups. Journal of Magnetic Resonance, 119(2), 171-179.

Mamdouh, W., Kelly, R. E. A., Dong, M., Jacobsen, M. F., Ferapontova, E., Kantorovich, L., Gothelf, K. V. & Besenbacher, F. (2009). Self-assembly of artificial nucleobase 1H-benzoimidazole-4,7-dione at the liquid/solid interface. Journal of Physical Chemistry Part B: Condensed Matter, Materials, Surfaces, Interfaces & Biophysical, 113(25), 8675-8681. https://doi.org/10.1021/jp9029419

Bomholdt Ravnsbæk, D., Filinchuk, Y., Cerenius, Y., Jakobsen, H. J., Besenbacher, F., Skibsted, J. & Jensen, T. R. (2009). Novel Zinc-based Hydrogen Storage Materials. Poster session presented at Beyond Kyoto, Århus, Denmark.

Shipovskov, S. (2008). Homogeneous Esterification By Lipase From B. cepacia in the fluorous biphasic system. Abstract from Biocatalysis in non-conventional media , Moscow, Russian Federation.

Eklund, P., Madana Gurusamy, S., Sillassen, M. B. & Bøttiger, J. (2008). α-Cr₂O₃template-texture effect on α-A1₂O₃ thin-film growth. Thin Solid Films, (516), 7447-7450.

Sanggaard, K. W., Sonne-Schmidt, C. S., Hansen, T. P. K., Kristensen, T., Wisniewski, H-G., Thøgersen, I. & Enghild, J. J. (2009). Unraveling of a unique catalytic activity transferring proteins between glycosaminoglycans. Poster session presented at The 6th international Conference on Proteoglycan, Aix-Les-Bains, France.

Nielsen, T. K., Cerenius, Y., Jensen, T. K. & Besenbacher, F. (2009). The properties of MgH2/Mg modified by the Niobium additives Nb, Nb2O5 and NbF5 - An in situ SR-PXD study.. Poster session presented at 38th Danish Crystallography and DanScatt annual meeting‏, DTU, Denmark.

Bracht, H., Schneider, S., Klug, J. N., Liao, C. Y., Hansen, J. L., Haller, E. E., Nylandsted Larsen, A., Bougeard, D., Posselt, M. & Wundisch, C. (2009). Interstitial-Mediated Diffusion in Germanium under Proton Irradiation. Physical Review Letters, 103(25), 25501. https://doi.org/10.1103/PhysRevLett.103.255501

Boyd, A. R., Holmberg, M., Duffy, H., Meenan, B. J. & Kingshott, P. (2008). In Vitro Protein Adsorption and Pro-inflammatory Response to Grafted Membranes. Paper presented at 8^th World Biomaterials Congress, Amsterdam, Netherlands.

Madsen, S. R., Lock, N., Overgaard, J. & Iversen, B. B. (2011). trans-Dibromidobis(1-ethyl-3-methylimidazol-2-ylidene)palladium(II). Acta Crystallographica. Section E: Structure Reports Online, E67, m1205. https://doi.org/10.1107/S1600536811030480

Jepsen, M., Beerens, N., Krüger, A. C., Kjems, J. & Birkedal, V. (2012). tRNA Annealing onto the HIV-1 Genome Studied by FRET Spectroscopy and Microscopy. Biophysical Journal, 102(3, Supplement 1), 278a . https://doi.org/10.1016/j.bpj.2011.11.1533

Andersen, M. Ø., Nygaard, J. V., Burns, J. S., Raarup, M. K., Nyengaard, J. R., Bünger, C., Besenbacher, F., Howard, K. A., Kassem, M. & Kjems, J. (2010). siRNA nanoparticle functionalization of nanostructured scaffolds enables controlled multilineage differentiation of stem cells. Molecular Therapy, 18(11), 2018-2027. https://doi.org/10.1038/mt.2010.166

Equbal, A., Paul, S., Mithu, V. S., Vinther, J. M., Nielsen, N. C. & Madhu, P. K. (2014). rTPPM: Towards Improving Solid-State NMR Two-Pulse Phase-Modulation Heteronuclear Dipolar Decoupling Sequence by Refocusing. Journal of Magnetic Resonance, 244, 68-73. https://doi.org/10.1016/j.jmr.2014.04.009

Holten-Andersen, N., Harrington, M. J., Birkedal, H., Lee, B. P., Messersmith, P. B., Lee, K. Y. C. & Waite, J. H. (2011). pH-induced metal-ligand cross-links inspired by mussel yield self-healing polymer networks with near-covalent elastic moduli. Proceedings of the National Academy of Sciences of the United States of America, 108(7), 2651–2655. https://doi.org/10.1073/pnas.1015862108

Wang, H., Andersen, K. K., Sehgal, P., Hagedorn, J., Westh, P., Borch, K. & Otzen, D. E. (2013). pH regulation of the kinetic stability of the lipase from Thermomyces lanuginosus. Biochemistry, 52(1), 264-276. https://doi.org/10.1021/bi301258e

Hemmersam, A. G., Rechendorf, K., Besenbacher, F., Kasemo, B. & Sutherland, D. (2008). pH dependent adsorption and conformational change of ferritin studied on metal oxide surfaces by a combination of QCM-D and AFM. Journal of Physical Chemistry Part C: Nanomaterials and Interfaces, 112, 4180-4186. https://doi.org/10.1021/jp072413t

Schlafer, S., Raarup, M. K., Meyer, R. L., Sutherland, D. S., Dige, I., Nyengaard, J. R. & Nyvad, B. (2011). pH Landscapes in a Novel Five-Species Model of Early Dental Biofilm. P L o S One, 6(9), e25299. https://doi.org/10.1371/journal.pone.0025299

Song, Y. J. C., Lundvig, D. M. S., Huang, Y., Gai, W. P., Blumbergs, P. C., Højrup, P., Otzen, D., Halliday, G. M. & Jensen, P. H. (2007). p25a Relocalizes in Oligodendroglia from Myelin to Cytoplasmic Inclusions in Multiple System Atrophy. Am. J. Path., (171), 1291-1303.

Li, S., Lu, X., Zhao, S., Ceccato, M., Hu, X-M., Roldan, A., Liu, M. & Daasbjerg, K. (2022). p-Block Indium Single-Atom Catalyst with Low-Coordinated In-N Motif for Enhanced Electrochemical CO₂ Reduction. ACS Catalysis, 12(12), 7386-7395. https://doi.org/10.1021/acscatal.2c01805

Hansen, T. B., Venø, M. T., Kjems, J. & Damgaard, C. K. (2014). miRdentify: high stringency miRNA predictor identifies several novel animal miRNAs. Nucleic Acids Research, 42(16), 1-11. [e124]. https://doi.org/10.1093/nar/gku598

Hansen, T. B., Wiklund, E. D., Bramsen, J. B., Villadsen, S. B., Statham, A. L., Clark, S. J. & Kjems, J. (2011). miRNA-dependent gene silencing involving Ago2-mediated cleavage of a circular antisense RNA. E M B O Journal, 30(21), 4414-4422. https://doi.org/10.1038/emboj.2011.359

Ostenfeld, M. S., Jensen, S. G., Jeppesen, D. K., Christensen, L-L., Thorsen, S. B., Stenvang, J., Hvam, M. L., Thomsen, A. R., Mouritzen, P., Rasmussen, M. H., Nielsen, H. J., Ørntoft, T. F. & Andersen, C. L. (2016). miRNA profiling of circulating EpCAM(+) extracellular vesicles: promising biomarkers of colorectal cancer. Journal of Extracellular Vesicles, 5, 31488. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5005366/pdf/JEV-5-31488.pdf

Hua, Y., Larsen, N., Kalyana-Sundaram, S., Kjems, J., Chinnaiyan, A. M. & Peter, M. E. (2013). miRConnect 2.0: identification of oncogenic, antagonistic miRNA families in three human cancers. B M C Genomics, 14(179), 1-18. https://doi.org/10.1186/1471-2164-14-179

Menbari, M. N., Rahimi, K., Ahmadi, A., Mohammadi-Yeganeh, S., Elyasi, A., Darvishi, N., Hosseini, V. & Abdi, M. (2020). miR-483-3p suppresses the proliferation and progression of human triple negative breast cancer cells by targeting the HDAC8>oncogene. Journal of Cellular Physiology, 235(3), 2631-2642. https://doi.org/10.1002/jcp.29167

Daugaard, I., Sanders, K. J., Idica, A., Vittayarukskul, K., Hamdorf, M., Krog, J. D., Chow, R., Jury, D., Hansen, L. L., Hager, H., Lamy, P., Choi, C. L., Agalliu, D. & Zisoulis, D. G. (2017). miR-151a induces partial EMT by regulating E-cadherin in NSCLC cells. Oncogenesis, 6(7), e366. https://doi.org/10.1038/oncsis.2017.66

Ostenfeld, M. S., Bramsen, J. B., Lamy, P., Villadsen, S. B., Fristrup, N., Dalsgaard Sørensen, K., Ulhøi, B. P., Borre, M., Kjems, J., Andersen, L. D. & Ørntoft, T. F. (2010). miR-145 induces caspase-dependent and -independent cell death in urothelial cancer cell lines with targeting of an expression signature present in Ta bladder tumors. Oncogene, 29(7), 1073. https://doi.org/10.1038/onc.2009.395

Hartmann, H., Hoehne, K., Rist, E., Louw, A. M. & Schlosshauer, B. (2015). miR-124 disinhibits neurite outgrowth in an inflammatory environment. Cell and Tissue Research, 362(1), 9-20. https://doi.org/10.1007/s00441-015-2183-y

Vosegaard, T. (2015). jsNMR: An Embedded Platform-Independent NMR Spectrum Viewer. Magnetic Resonance in Chemistry, 53(4), 285-290. https://doi.org/10.1002/mrc.4195

Xiong, X. (2022). in situ Monitoring and Localizing Resistive Properties in 2D Material Based Memristors. Aarhus Universitet.

Vosegaard, T. (2018). iSpec: A Web-Based Activity for Spectroscopy Teaching. Journal of Chemical Education, 95(1), 90-103. https://doi.org/10.1021/acs.jchemed.7b00482

Preus, S., Noer, S. L., Hildebrandt, L. L., Gudnason, D. & Birkedal, V. (2015). iSMS: single-molecule FRET microscopy software. Nature Methods, 12(7), 593-594. https://doi.org/10.1038/nmeth.3435

Jensen, T. N. (2014, Sep 15). iNANO scientists solve an important oxide surface structure for heterogeneous catalysis. http://scitech.au.dk/en/current-affairs/news/show/artikel/inano-scientists-solve-an-important-oxide-surface-structure-for-heterogeneous-catalysis/

Xu, R., Taskin, M. B., Rubert, M., Seliktar, D., Besenbacher, F. & Chen, M. (2015). hiPS-MSCs differentiation towards fibroblasts on a 3D ECM mimicking scaffold. Scientific Reports, 5, 1-7. [8480]. https://doi.org/10.1038/srep08480

Moldovan, L-I. (2021). circRNAs: New biomarkers in inflammatory skin diseases? Aarhus Universitet.

Josipovic, N., Ebbesen, K. K., Zirkel, A., Danieli-Mackay, A., Dieterich, C., Kurian, L., Hansen, T. B. & Papantonis, A. (2022). circRAB3IP modulates cell proliferation by reorganizing gene expression and mRNA processing in a paracrine manner. RNA (New York, N.Y.), 28(11), 1481-1495. https://doi.org/10.1261/rna.079195.122

Nielsen, S. B., Franzmann, M., Basaiawmoit, R. V., Wimmer, R., Mikkelsen, J. D. & Otzen, D. E. (2010). beta-Sheet aggregation of kisspeptin-10 is stimulated by heparin but inhibited by amphiphiles. Biopolymers, 93(8), 678-89. https://doi.org/10.1002/bip.21434

Jacobsen, M. J., Funder, E. D., Cramer, J. R. & Gothelf, K. V. (2011). beta-Olefination of 2-Alkynoates Leading to Trisubstituted 1,3-Dienes. Organic Letters, 13, 3418–3421.

Salvesen, G. & Enghild, J. J. (1993). alpha-Macroglobulins: detection and characterization. Methods in Enzymology, 223, 121-41.

Falkenberg, C., Allhorn, M., Thøgersen, I. B., Valnickova, Z., Pizzo, S. V., Salvesen, G., Akerström, B. & Enghild, J. J. (1995). alpha 1-Microglobulin destroys the proteinase inhibitory activity of alpha 1-inhibitor-3 by complex formation. Journal of Biological Chemistry, 270(9), 4478-83.

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Lise Refstrup Linnebjerg Pedersen