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Interdisciplinary Nanoscience Center

Publications from Nanomedicine

Publications

Venø, M. T., Bramsen, J. B., Bendixen, C., Panitz, F., Holm, I. E., Öhman, M. & Kjems, J. (2012). Spatio-temporal regulation of ADAR editing during development in porcine neural tissues. RNA Biology, 9(8), 1054-1065. https://doi.org/10.4161/rna.21082

Daniel, C., Venø, M. T., Ekdahl, Y., Kjems, J. & Öhman, M. (2012). A distant cis acting intronic element induces site-selective RNA editing. Nucleic Acids Research, 40(19), 9876-9886. https://doi.org/10.1093/nar/gks691

Sükösd, Z., Knudsen, B., Kjems, J. & Pedersen, C. N. S. (2012). PPfold 3.0: fast RNA secondary structure prediction using phylogeny and auxiliary data. Bioinformatics, 28(20), 2691-2692. https://doi.org/10.1093/bioinformatics/bts488

Damgaard, C. K., Lykke-Andersen, S. & Kjems, J. (2012). Stable Cell Lines with Splicing Reporters. In S. Stamm, C. W. J. Smith & R. Luhrmann (Eds.), Alternative pre-mRNA Splicing: Theory and Protocols (1 ed., pp. 408-414). Wiley-VCH. https://doi.org/10.1002/9783527636778.ch38

Lützelberger, M. & Kjems, J. (2006). Strategies to identify potential therapeutic target sites in RNA. In V. Erdmann, J. Barciszewski & J. Brosius (Eds.), Handbook of Experimental Pharmacology: RNA Towards Medicine (Vol. 173, pp. 243-259). Springer. https://doi.org/10.1007/b138836

Kjems, J., Frankel, A. D. & Sharp, P. A. (1991). Specific regulation of mRNA splicing in vitro by a peptide from HIV-1 Rev. Cell, 67(1), 169-178. https://doi.org/10.1016/0092-8674(91)90580-R

Lykke-Andersen, J., Garrett, R. A. & Kjems, J. (1997). Mapping metal ions at the catalytic centres of two intron-encoded endonucleases. EMBO Journal, 16(11), 3272-3281. https://doi.org/10.1093/emboj/16.11.3272

Tange, T. Ø., Damgaard, C. K., Guth, S., Valcárcel, J. & Kjems, J. (2001). The hnRNP A1 protein regulates HIV-1 tat splicing via a novel intron silencer element. EMBO Journal, 20(20), 5748-5758. https://doi.org/10.1093/emboj/20.20.5748

Andersen, E. S., Jeeninga, R. E., Damgaard, C. K., Berkhout, B. & Kjems, J. (2003). Dimerization and template switching in the 5' untranslated region between various subtypes of human immunodeficiency virus type 1. Journal of Virology, 77(5), 3020-30. https://doi.org/10.1128/JVI.77.5.3020-3030.2003

Köster, M., Lykke-Andersen, S., Elnakady, Y. A., Gerth, K., Washausen, P., Höfle, G., Sasse, F., Kjems, J. & Hauser, H. (2003). Ratjadones inhibit nuclear export by blocking CRM1/exportin 1. Experimental Cell Research, 286(2), 321-331. https://doi.org/10.1016/S0014-4827(03)00100-9

Freund, M., Asang, C., Kammler, S., Konermann, C., Krummheuer, J., Hipp, M., Meyer, I., Gierling, W., Theiss, S., Preuss, T., Schindler, D., Kjems, J. & Schaal, H. (2003). A novel approach to describe a U1 snRNA binding site. Nucleic Acids Research, 31(23), 6963-6975. https://doi.org/10.1093/nar/gkg901

Zahler, A. M., Damgaard, C. K., Kjems, J. & Caputi, M. (2004). SC35 and heterogeneous nuclear ribonucleoprotein A/B proteins bind to a juxtaposed exonic splicing enhancer/exonic splicing silencer element to regulate HIV-1 tat exon 2 splicing. Journal of Biological Chemistry, 279(11), 10077-10084. https://doi.org/10.1074/jbc.M312743200

Damgaard, C. K., Andersen, E. S., Knudsen, B., Gorodkin, J. & Kjems, J. (2004). RNA interactions in the 5' region of the HIV-1 genome. Journal of Molecular Biology, 336(2), 369-79. https://doi.org/10.1016/j.jmb.2003.12.010

Andersen, E. S., Contera, S. A., Knudsen, B., Damgaard, C. K., Besenbacher, F. & Kjems, J. (2004). Role of the trans-activation response element in dimerization of HIV-1 RNA. Journal of Biological Chemistry, 279(21), 22243-22249. https://doi.org/10.1074/jbc.M314326200

Jakobsen, M. R., Damgaard, C. K., Andersen, E. S., Podhajska, A. & Kjems, J. (2004). A genomic selection strategy to identify accessible and dimerization blocking targets in the 5'-UTR of HIV-1 RNA. Nucleic Acids Research, 32(7), e67. https://doi.org/10.1093/nar/gnh064

Knudsen, B., Andersen, E. S., Damgaard, C. K., Kjems, J. & Gorodkin, J. (2004). Evolutionary rate variation and RNA secondary structure prediction. Computational Biology and Chemistry, 28(3), 219-26. https://doi.org/10.1016/j.compbiolchem.2004.04.001

Nielsen, M. H., Pedersen, F. S. & Kjems, J. (2005). Molecular strategies to inhibit HIV-1 replication. Retrovirology, 2, 10. https://doi.org/10.1186/1742-4690-2-10

Furnes, C., Arnesen, T., Askjaer, P., Kjems, J. & Szilvay, A. M. (2005). HIV-1 Rev oligomerization is not obligatory in the presence of an extra basic domain. Retrovirology, 2, 39. https://doi.org/10.1186/1742-4690-2-39

Mukhopadhyay, R., Lorentzen, M., Kjems, J. & Besenbacher, F. (2005). Nanomechanical sensing of DNA sequences using piezoresistive cantilevers. Langmuir, 21(18), 8400-8408. https://doi.org/10.1021/la0511687

Mohey, R., Jørgensen, A. L., Møller, B. K., Black, F. T., Kjems, J. & Obel, N. (2005). Detection and quantification of proviral HIV-1 184 M/V in circulating CD4(+) T cells of patients on HAART with a viremia less than 1000 copies/ml. Journal of Clinical Virology, 34(4), 257-267. https://doi.org/10.1016/j.jcv.2005.02.015

Revised 29.01.2025

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Anne Færch Nielsen