Dong, M. D., Howard, K. A., Oupicky, D., Bisht, H., Kjems, J. & Besenbacher, F. (2007). Visualization of thermally activated nanocarriers using in situ atomic force microscopy: Nanotechnology. Nanotechnology, 18(18), Article 185501. https://doi.org/10.1088/0957-4484/18/18/185501

Dong, M., Howard, K. A., Oupicky, D., Bisht, H. J., Kjems, J. & Besenbacher, F. (2007). Visualisation of Thermal Activated Nanocarriers Using In Situ Atomic Force Microscopy. Nanotechnology.

Laursen, M. B., Pakula, M. M., Gao, S., Fluiter, K., Mook, O. R., Baas, F., Langklaer, N., Wengel, S. L., Wengel, J., Kjems, J. & Bramsen, J. B. (2010). Utilization of unlocked nucleic acid (UNA) to enhance siRNA performance in vitro and in vivo. Molecular BioSystems, 6(5), 862-70. https://doi.org/10.1039/b918869j

Dyrlund, T. F., Kirkegaard, K., Poulsen, E. T., Sanggaard, K. W., Hindkjær, J. J., Kjems, J., Enghild, J. J. & Ingerslev, H. J. (2014). Unconditioned commercial embryo culture media contain a large variety of non-declared proteins: a comprehensive proteomics analysis. Human Reproduction, 29(1), 2421-2430. https://doi.org/10.1093/humrep/deu220

Jørgensen, A. G., Dupont, D. M., Fjelstrup, S., Bus, C., Hansen, C. B., Benfield, T., Garred, P., Heegaard, P. M. H. & Kjems, J. (2024). Unbiased plasma profiling using pre-selected RNA aptamer pools predicts mortality in COVID-19 and identifies protein risk factors. Molecular Therapy Nucleic Acids, 35(3), Article 102253. https://doi.org/10.1016/j.omtn.2024.102253

Yang, C., Thomsen, R. P., Ogaki, R., Kjems, J. & Mian Teo, B. (2015). Ultrastable green fluorescence carbon dots with a high quantum yield for bioimaging and use as theranostic carriers. Journal of Materials Chemistry B, 3(4577), 4577-4584. https://doi.org/10.1039/C5TB00467E

Wittenborn, T., Nielsen, T., Nygaard, J. V., Larsen, E. K. U., Thim, T., Rydtoft, L. M., Vorup-Jensen, T., Kjems, J., Nielsen, N. C., Horsman, M. R. & Falk, E. (2012). Ultra-High-Field DCE-MRI of Angiogenesis in a Novel Angiogenesis Mouse Model. Journal of Magnetic Resonance Imaging, 35(3), 703-710. https://doi.org/10.1002/jmri.22855

Jepsen, M., Beerens, N., Krüger, A. C., Kjems, J. & Birkedal, V. (2012). tRNA Annealing onto the HIV-1 Genome Studied by FRET Spectroscopy and Microscopy. Biophysical Journal, 102(3, Supplement 1), 278a . https://doi.org/10.1016/j.bpj.2011.11.1533

Novotny, G. W., Sonne, S., Nielsen, J. E., Jonstrup, S. P., Hansen, M. A., Skakkebaek, N. E., Rajpert-De Meyts, E., Kjems, J. & Leffers, H. (2007). Translational repression of E2F1 mRNA in carcinoma in situ and normal testis correlates with expression of the miR-17-92 cluster. Cell Death and Differentiation, 14(4), 879-882. https://doi.org/10.1038/sj.cdd.4402090

Okholm, A. H. & Kjems, J. (2017). The utility of DNA nanostructures for drug delivery in vivo. Expert Opinion on Drug Delivery, 14(2), 137-139. https://doi.org/10.1080/17425247.2017.1266335

Korsgaard, U., García-Rodríguez, J. L., Jakobsen, T., Ahmadov, U., Dietrich, K. G., Vissing, S. M., Paasch, T. P., Lindebjerg, J., Kjems, J., Hager, H. & Kristensen, L. S. (2024). The Transcriptional Landscape of Coding and Noncoding RNAs in Recurrent and Nonrecurrent Colon Cancer. American Journal of Pathology, 194(8), 1424-1442. https://doi.org/10.1016/j.ajpath.2024.04.003

Hansen, E. K. B., Fredsøe, J. H., Okholm, T. L. H., Ulhøi, B. P., Klingenberg, S., Jensen, J. B., Kjems, J., Bouchelouche, K., Borre, M., Damgaard, C. K., Pedersen, J. S., Kristensen, L. S. & Sørensen, K. D. (2022). The transcriptional landscape and biomarker potential of circular RNAs in prostate cancer. Genome Medicine, 14(1), Article 8. https://doi.org/10.1186/s13073-021-01009-3

O’Leary, E., Jiang, Y., Kristensen, L. S., Hansen, T. B. & Kjems, J. (2025). The therapeutic potential of circular RNAs. Nature Reviews Genetics, 26, 230-244. Article 2629. https://doi.org/10.1038/s41576-024-00806-x

Kammler, S., Otte, M., Hauber, I., Kjems, J., Hauber, J. & Schaal, H. (2006). The strength of the HIV-1 3' splice sites affects Rev function. Retrovirology, 3(89), 1-20. https://doi.org/10.1186/1742-4690-3-89

Kammler, S., Leurs, C., Krummheuer, J., Seidel, K., Freund, M., Tange, T., Kjems, J., Scheid, A. & Schaal, H. (2001). The sequence complementarity of the HIV-1 5′ splice site SD4 and of U1 snRNA determines the steady-state level of an instable env pre-mRNA. RNA, 7, 421-434.

Gu, T., Just, J., Stenz, K. T., Yan, Y., Sieljacks, P., Wang, J., Groennebaek, T. S., Jakobsgaard, J. E., Rindom, E., Herskind, J., Gravholt, A., Lassen, T. R., Jørgensen, M., Bæk, R., Gutiérrez-Jiménez, E., Iversen, N. K., Rasmussen, P. M., Nyengaard, J. R., Jørgensen, M. M. ... Drasbek, K. R. (2022). The Role of Plasma Extracellular Vesicles in Remote Ischemic Conditioning and Exercise-Induced Ischemic Tolerance. International Journal of Molecular Sciences , 23(6), Article 3334. https://doi.org/10.3390/ijms23063334

Khateb, H., Sørensen, R. S., Cramer, K., Eklund, A. S., Kjems, J., Meyer, R. L., Jungmann, R. & Sutherland, D. S. (2022). The Role of Nanoscale Distribution of Fibronectin in the Adhesion of Staphylococcus aureus Studied by Protein Patterning and DNA-PAINT. ACS Nano, 16(7), 10392-10403. https://doi.org/10.1021/acsnano.2c00630

Andersen, F. F., Tange, T. Ø., Sinnathamby, T., Olesen, J. R., Andersen, K. E., Westergaard, O., Kjems, J. & Knudsen, B. R. (2002). The RNA splicing factor ASF/SF2 inhibits human topoisomerase I mediated DNA relaxation. Journal of Molecular Biology.

Lorenzi, L., Chiu, H. S., Avila Cobos, F., Gross, S., Volders, P. J., Cannoodt, R., Nuytens, J., Vanderheyden, K., Anckaert, J., Lefever, S., Tay, A. P., de Bony, E. J., Trypsteen, W., Gysens, F., Vromman, M., Goovaerts, T., Hansen, T. B., Kuersten, S., Nijs, N. ... Mestdagh, P. (2021). The RNA Atlas expands the catalog of human non-coding RNAs. Nature Biotechnology, 39(11), 1453-1465. https://doi.org/10.1038/s41587-021-00936-1

Vu-Quang, H., Vinding, M. S., Nielsen, T., Ullisch, M. G., Nielsen, N. C. & Kjems, J. (2016). Theranostic Tumor Targeted Nanoparticles Combining Drug Delivery with Dual Near Infrared and (19)F Magnetic Resonance Imaging Modalities. Nanomedicine: Nanotechnology, Biology and Medicine, 12(7), 1873-1884. https://doi.org/10.1016/j.nano.2016.04.010

Yang, C., Vu Quang, H., Husum, D. M. U., Tingskov, S. J. H., Vinding, M. S., Nielsen, T., Song, P., Nielsen, N. C., Nørregaard, R. & Kjems, J. (2017). Theranostic poly(lactic-co-glycolic acid) nanoparticle for magnetic resonance/infrared fluorescence bimodal imaging and efficient siRNA delivery to macrophages and its evaluation in a kidney injury model. Nanomedicine: Nanotechnology, Biology and Medicine, 13(8), 2451–2462. https://doi.org/10.1016/j.nano.2017.08.007

Yang, C., Gao, S., Song, P., Dagnæs-Hansen, F., Jakobsen, M. V. & Kjems, J. (2018). Theranostic Niosomes for Efficient siRNA/microRNA Delivery and Activatable Near-Infrared Fluorescent Tracking of Stem Cells. A C S Applied Materials and Interfaces, 10(23), 19494–19503. https://doi.org/10.1021/acsami.8b05513

Yang, C., Ogaki, R., Hansen, L., Kjems, J. & Mian Teo, B. (2015). Theranostic carbon dots derived from garlic with efficient anti-oxidative effects towards macrophages. R S C Advances, 118, 97836-97840. https://doi.org/10.1039/C5RA16874K

Villadsen, S. B., Bramsen, J. B., Ostenfeld, M. S., Wiklund, E. D., Fristrup, N., Gao, S., Hansen, T. B., Jensen, T. I., Borre, M., Orntoft, T. F., Dyrskjøt, L. & Kjems, J. (2012). The miR-143/-145 cluster regulates plasminogen activator inhibitor-1 in bladder cancer. B J C, 106(2), 366-374. https://doi.org/10.1038/bjc.2011.520

Hansen, T. B. & Kjems, J. (2017). The invasion of circRNAs. RNA Biology, 14(8), 973-974. https://doi.org/10.1080/15476286.2017.1360467

Liu, X., Howard, K. A., Dong, M., Andersen, M. Ø., Rahbek, U. L., Johnsen, M. G., Hansen, O. C., Besenbacher, F. & Kjems, J. (2007). The influence of polymeric properties on chitosan/siRNA nanoparticle formulation and gene silencing. Biomaterials, 28(6), 1280-8. https://doi.org/10.1016/j.biomaterials.2006.11.004

Lykke-Andersen, S., Piñol-Roma, S. & Kjems, J. (2007). The human ADAR1 transcripts contain an alternative retained intron within a region that functions both as a 5'UTR and an ORF. RNA, 89(10).

Tange, T. Ø., Damgaard, C. K., Guth, S., Valcárcel, J. & Kjems, J. (2001). The hnRNP A1 protein regulates HIV-1 tat splicing via a novel intron silencer element. E M B O Journal, 20(20), 5748-5758. https://doi.org/10.1093/emboj/20.20.5748

Kristensen, L. S., Jakobsen, T., Hager, H. & Kjems, J. (2022). The emerging roles of circRNAs in cancer and oncology. Nature Reviews. Clinical Oncology, 19(3), 188-206. https://doi.org/10.1038/s41571-021-00585-y

Qu, S., Zhong, Y., Shang, R., Zhang, X., Song, W., Kjems, J. & Li, H. (2017). The emerging landscape of circular RNA in life processes. RNA Biology, 14(8), 992-999. https://doi.org/10.1080/15476286.2016.1220473

Gao, S., Dagnæs-Hansen, F., Nielsen, E. J. B., Wengel, J., Besenbacher, F., Howard, K. A. & Kjems, J. (2009). The effect of chemical modification and nanoparticle formulation on stability and biodistribution of siRNA in mice. Molecular Therapy, 17(7), 1225-1233. https://doi.org/10.1038/mt.2009.91

Paca-Uccaralertkun, S., Damgaard, C. K., Auewarakul, P., Thitithanyanont, A., Suphaphiphat, P., Essex, M., Kjems, J. & Lee, T.-H. (2006). The Effect of a Single Nucleotide Substitution in the Splicing Silencer in the tat/rev Intron on HIV Type 1 Envelope Expression. AIDS Research and Human Retroviruses, 22(1), 76-82. https://doi.org/10.1089/aid.2006.22.76

Dirac, A. M., Huthoff, H., Kjems, J. & Berkhout, B. (2001). The DIS hairpin mediates dimerization of the HIV-2 RNA genome. Journal of Biological Chemistry, 276, 32345-32352.

Nilsson, J., Weis, K. & Kjems, J. (2002). The C-terminal extension of the small GTPase Ran is essential for defining the GDP-bound form. J. Mol. Biol., 318, 583-593.

Reinhold, D., Farztdinov, V., Yan, Y., Meisel, C., Sadlowski, H., Kühn, J., Perschel, F. H., Endres, M., Düzel, E., Vielhaber, S., Guttek, K., Goihl, A., Venø, M., Teegen, B., Stöcker, W., Stubbemann, P., Kurth, F., Sander, L. E., Ralser, M. ... Körtvelyessy, P. (2023). The brain reacting to COVID-19: analysis of the cerebrospinal fluid proteome, RNA and inflammation. Journal of Neuroinflammation, 20, Article 30. https://doi.org/10.1186/s12974-023-02711-2

Kristensen, L. S., Schertz Andersen, M., Stagsted, L. V. W., Ebbesen, K., Hansen, T. B. & Kjems, J. (2019). The biogenesis, biology and characterization of circular RNAs. Nature Reviews. Genetics, 20(11), 675-691. https://doi.org/10.1038/s41576-019-0158-7

Freund, M., Kammler, S., Krummheuer, J., Hipp, M., Meyer, I., Gierling, W., Theiss, S., Preuss, T., Kjems, J. & Schaal, H. (2003). The 5′ splice site consensus: hydrogen bonding pattern or nucleotide frequency? Nucl. Acid Res., 31, 6963-6975.

Rosen, C. B., Kodal, A. L. B., Nielsen, J. S., Schaffert, D. H., Scavenius, C., Okholm, A. H., Voigt, N. V., Enghild, J. J., Kjems, J., Tørring, T. & Gothelf, K. V. (2014). Template-directed covalent conjugation of DNA to native antibodies, transferrin and other metal-binding proteins. Nature Chemistry, 6(9), 804-809. https://doi.org/10.1038/nchem.2003

Hansen, L., Unmack Larsen, E. K., Nielsen, E. H., Iversen, F., Liu, Z., Thomsen, K., Pedersen, M., Skrydstrup, T., Nielsen, N. C., Ploug, M. & Kjems, J. (2013). Targeting of peptide conjugated magnetic nanoparticles to urokinase plasminogen activator receptor (uPAR) expressing cells. Nanoscale, 5, 8192-8201. https://doi.org/10.1039/c3nr32922d

Korhonen, S., Stenberg, K., Seemab, U., Bartos, P., Mäkiniemi, K., Kjems, J., Dupont, D. M. & Subrizi, A. (2024). Targeting ocular tissues with intravenously administered aptamers selected by in vivo SELEX. Molecular Therapy Nucleic Acids, 35(4), Article 102352. https://doi.org/10.1016/j.omtn.2024.102352

Odadzic, D., Bramsen, J. B., Smicius, R., Bus, C., Kjems, J. & Engels, J. W. (2008). Synthesis of 2'-O-modified adenosine building blocks and application for RNA interference. Bioorganic & Medicinal Chemistry, 16(1), 518-529. https://doi.org/10.1016/j.bmc.2007.09.019